Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MJP entry

There are 5 chains in PDB entry 7MJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 366
B	ARG 30	GLN 367
C	ARG 30	THR 368
D	ARG 30	THR 368
E	MET 1	VAL 1541

There are 93 helices in PDB entry 7MJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	21	Right-handed alpha
Helix 2	AA2	A	56	66	Right-handed alpha
Helix 3	AA3	A	68	98	Right-handed alpha
Helix 4	AA4	A	99	110	Right-handed alpha
Helix 5	AA5	A	126	139	Right-handed alpha
Helix 6	AA6	A	152	183	Right-handed alpha
Helix 7	AA7	A	275	280	Right-handed 310
Helix 8	AA8	A	340	342	Right-handed 310
Helix 9	AA9	B	56	66	Right-handed alpha
Helix 10	AB1	B	68	98	Right-handed alpha
Helix 11	AB2	B	100	111	Right-handed alpha
Helix 12	AB3	B	126	139	Right-handed alpha
Helix 13	AB4	B	152	183	Right-handed alpha
Helix 14	AB5	B	282	286	Right-handed 310
Helix 15	AB6	B	340	342	Right-handed 310
Helix 16	AB7	B	356	361	Right-handed alpha
Helix 17	AB8	B	361	366	Right-handed alpha
Helix 18	AB9	C	57	66	Right-handed alpha
Helix 19	AC1	C	68	97	Right-handed alpha
Helix 20	AC2	C	99	108	Right-handed alpha
Helix 21	AC3	C	114	118	Right-handed 310
Helix 22	AC4	C	126	139	Right-handed alpha
Helix 23	AC5	C	152	183	Right-handed alpha
Helix 24	AC6	C	340	342	Right-handed 310
Helix 25	AC7	C	354	361	Right-handed alpha
Helix 26	AC8	D	58	66	Right-handed alpha
Helix 27	AC9	D	68	98	Right-handed alpha
Helix 28	AD1	D	99	110	Right-handed alpha
Helix 29	AD2	D	113	119	Right-handed 310
Helix 30	AD3	D	126	139	Right-handed alpha
Helix 31	AD4	D	152	183	Right-handed alpha
Helix 32	AD5	D	184	186	Right-handed 310
Helix 33	AD6	D	275	280	Right-handed 310
Helix 34	AD7	D	282	286	Right-handed 310
Helix 35	AD8	D	354	361	Right-handed alpha
Helix 36	AD9	E	9	13	Right-handed 310
Helix 37	AE1	E	22	47	Right-handed alpha
Helix 38	AE2	E	69	96	Right-handed alpha
Helix 39	AE3	E	101	104	Right-handed 310
Helix 40	AE4	E	105	127	Right-handed alpha
Helix 41	AE5	E	130	133	Right-handed 310
Helix 42	AE6	E	134	159	Right-handed alpha
Helix 43	AE7	E	164	192	Right-handed alpha
Helix 44	AE8	E	216	220	Right-handed 310
Helix 45	AE9	E	221	227	Right-handed alpha
Helix 46	AF1	E	231	237	Right-handed alpha
Helix 47	AF2	E	244	248	Right-handed 310
Helix 48	AF3	E	256	278	Right-handed alpha
Helix 49	AF4	E	285	290	Right-handed alpha
Helix 50	AF5	E	294	312	Right-handed alpha
Helix 51	AF6	E	312	326	Right-handed alpha
Helix 52	AF7	E	340	346	Right-handed alpha
Helix 53	AF8	E	347	394	Right-handed alpha
Helix 54	AF9	E	406	416	Right-handed alpha
Helix 55	AG1	E	416	427	Right-handed alpha
Helix 56	AG2	E	428	432	Right-handed 310
Helix 57	AG3	E	433	450	Right-handed alpha
Helix 58	AG4	E	451	462	Right-handed alpha
Helix 59	AG5	E	462	498	Right-handed alpha
Helix 60	AG6	E	498	506	Right-handed alpha
Helix 61	AG7	E	511	559	Right-handed alpha
Helix 62	AG8	E	564	606	Right-handed alpha
Helix 63	AG9	E	706	716	Right-handed alpha
Helix 64	AH1	E	761	768	Right-handed alpha
Helix 65	AH2	E	773	784	Right-handed alpha
Helix 66	AH3	E	785	793	Right-handed alpha
Helix 67	AH4	E	795	799	Right-handed 310
Helix 68	AH5	E	809	823	Right-handed alpha
Helix 69	AH6	E	840	855	Right-handed alpha
Helix 70	AH7	E	891	897	Right-handed alpha
Helix 71	AH8	E	900	910	Right-handed alpha
Helix 72	AH9	E	976	983	Right-handed alpha
Helix 73	AI1	E	987	1018	Right-handed alpha
Helix 74	AI2	E	1028	1073	Right-handed alpha
Helix 75	AI3	E	1076	1083	Right-handed alpha
Helix 76	AI4	E	1086	1102	Right-handed alpha
Helix 77	AI5	E	1102	1128	Right-handed alpha
Helix 78	AI6	E	1129	1177	Right-handed alpha
Helix 79	AI7	E	1177	1184	Right-handed alpha
Helix 80	AI8	E	1186	1236	Right-handed alpha
Helix 81	AI9	E	1241	1258	Right-handed alpha
Helix 82	AJ1	E	1259	1282	Right-handed alpha
Helix 83	AJ2	E	1294	1298	Right-handed 310
Helix 84	AJ3	E	1349	1356	Right-handed alpha
Helix 85	AJ4	E	1367	1371	Right-handed 310
Helix 86	AJ5	E	1372	1376	Right-handed 310
Helix 87	AJ6	E	1377	1383	Right-handed alpha
Helix 88	AJ7	E	1414	1420	Right-handed alpha
Helix 89	AJ8	E	1442	1461	Right-handed alpha
Helix 90	AJ9	E	1475	1489	Right-handed alpha
Helix 91	AK1	E	1505	1509	Right-handed 310
Helix 92	AK2	E	1528	1533	Right-handed alpha
Helix 93	AK3	E	1534	1540	Right-handed alpha

There are 21 sheets in PDB entry 7MJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	B	335	338	parallel
Strand 3	B	329	330	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	211	213	anti-parallel
Strand 3	A	265	266	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	205	206	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	248	first strand
Strand 2	A	220	234	anti-parallel
Strand 3	A	291	300	anti-parallel
Strand 4	A	305	314	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	345	347	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	D	46	48	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	C	337	338	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	206	214	anti-parallel
Strand 3	B	265	270	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	206	214	anti-parallel
Strand 3	B	197	201	anti-parallel
Strand 4	B	318	320	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	230	first strand
Strand 2	B	291	300	anti-parallel
Strand 3	B	306	314	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	240	241	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	345	347	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	D	334	338	parallel
Strand 3	D	329	331	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	205	212	anti-parallel
Strand 3	C	197	202	anti-parallel
Strand 4	C	318	319	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	248	first strand
Strand 2	C	220	231	anti-parallel
Strand 3	C	291	300	anti-parallel
Strand 4	C	307	314	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	323	first strand
Strand 2	C	346	347	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	193	first strand
Strand 2	D	205	214	anti-parallel
Strand 3	D	265	270	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	193	first strand
Strand 2	D	205	214	anti-parallel
Strand 3	D	198	202	anti-parallel
Strand 4	D	319	320	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	248	first strand
Strand 2	D	221	231	anti-parallel
Strand 3	D	292	299	anti-parallel
Strand 4	D	306	313	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	324	first strand
Strand 2	D	345	347	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	880	881	first strand
Strand 2	E	885	887	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJP