Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MJQ entry

There are 6 chains in PDB entry 7MJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 23	THR 368
B	ARG 30	ILE 366
C	ARG 30	GLN 367
D	ARG 30	ILE 366
E	MET 1	ALA 1543
G	MET 1	ASN 198

There are 91 helices in PDB entry 7MJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	29	Right-handed alpha
Helix 2	AA2	A	57	66	Right-handed alpha
Helix 3	AA3	A	68	98	Right-handed alpha
Helix 4	AA4	A	100	106	Right-handed alpha
Helix 5	AA5	A	126	139	Right-handed alpha
Helix 6	AA6	A	152	183	Right-handed alpha
Helix 7	AA7	A	281	288	Right-handed 310
Helix 8	AA8	A	314	318	Right-handed 310
Helix 9	AA9	A	353	358	Right-handed alpha
Helix 10	AB1	B	56	66	Right-handed alpha
Helix 11	AB2	B	68	98	Right-handed alpha
Helix 12	AB3	B	99	106	Right-handed alpha
Helix 13	AB4	B	126	138	Right-handed alpha
Helix 14	AB5	B	152	184	Right-handed alpha
Helix 15	AB6	B	281	286	Right-handed alpha
Helix 16	AB7	B	314	316	Right-handed 310
Helix 17	AB8	B	355	361	Right-handed alpha
Helix 18	AB9	C	57	66	Right-handed alpha
Helix 19	AC1	C	68	94	Right-handed alpha
Helix 20	AC2	C	99	107	Right-handed alpha
Helix 21	AC3	C	111	118	Right-handed alpha
Helix 22	AC4	C	127	139	Right-handed alpha
Helix 23	AC5	C	152	182	Right-handed alpha
Helix 24	AC6	C	275	280	Right-handed 310
Helix 25	AC7	C	314	316	Right-handed 310
Helix 26	AC8	C	354	360	Right-handed alpha
Helix 27	AC9	D	58	66	Right-handed alpha
Helix 28	AD1	D	68	73	Right-handed alpha
Helix 29	AD2	D	74	98	Right-handed alpha
Helix 30	AD3	D	99	107	Right-handed alpha
Helix 31	AD4	D	128	138	Right-handed alpha
Helix 32	AD5	D	152	183	Right-handed alpha
Helix 33	AD6	D	276	280	Right-handed 310
Helix 34	AD7	D	283	287	Right-handed 310
Helix 35	AD8	D	314	318	Right-handed 310
Helix 36	AD9	D	354	359	Right-handed alpha
Helix 37	AE1	D	361	366	Right-handed alpha
Helix 38	AE2	E	24	45	Right-handed alpha
Helix 39	AE3	E	68	97	Right-handed alpha
Helix 40	AE4	E	105	128	Right-handed alpha
Helix 41	AE5	E	130	159	Right-handed alpha
Helix 42	AE6	E	165	191	Right-handed alpha
Helix 43	AE7	E	218	225	Right-handed alpha
Helix 44	AE8	E	231	237	Right-handed alpha
Helix 45	AE9	E	245	249	Right-handed 310
Helix 46	AF1	E	250	255	Right-handed alpha
Helix 47	AF2	E	255	276	Right-handed alpha
Helix 48	AF3	E	286	294	Right-handed alpha
Helix 49	AF4	E	297	324	Right-handed alpha
Helix 50	AF5	E	342	347	Right-handed alpha
Helix 51	AF6	E	347	394	Right-handed alpha
Helix 52	AF7	E	408	413	Right-handed alpha
Helix 53	AF8	E	417	434	Right-handed alpha
Helix 54	AF9	E	434	449	Right-handed alpha
Helix 55	AG1	E	452	497	Right-handed alpha
Helix 56	AG2	E	498	503	Right-handed alpha
Helix 57	AG3	E	509	511	Right-handed 310
Helix 58	AG4	E	512	556	Right-handed alpha
Helix 59	AG5	E	564	579	Right-handed alpha
Helix 60	AG6	E	580	607	Right-handed alpha
Helix 61	AG7	E	706	715	Right-handed alpha
Helix 62	AG8	E	774	784	Right-handed alpha
Helix 63	AG9	E	809	823	Right-handed alpha
Helix 64	AH1	E	843	855	Right-handed alpha
Helix 65	AH2	E	893	898	Right-handed alpha
Helix 66	AH3	E	900	907	Right-handed alpha
Helix 67	AH4	E	909	914	Right-handed 310
Helix 68	AH5	E	962	969	Right-handed alpha
Helix 69	AH6	E	973	986	Right-handed alpha
Helix 70	AH7	E	988	993	Right-handed alpha
Helix 71	AH8	E	993	1015	Right-handed alpha
Helix 72	AH9	E	1026	1073	Right-handed alpha
Helix 73	AI1	E	1076	1083	Right-handed alpha
Helix 74	AI2	E	1084	1102	Right-handed alpha
Helix 75	AI3	E	1102	1128	Right-handed alpha
Helix 76	AI4	E	1129	1135	Right-handed alpha
Helix 77	AI5	E	1135	1177	Right-handed alpha
Helix 78	AI6	E	1186	1238	Right-handed alpha
Helix 79	AI7	E	1240	1280	Right-handed alpha
Helix 80	AI8	E	1343	1354	Right-handed alpha
Helix 81	AI9	E	1380	1385	Right-handed 310
Helix 82	AJ1	E	1415	1421	Right-handed alpha
Helix 83	AJ2	E	1453	1459	Right-handed alpha
Helix 84	AJ3	E	1475	1494	Right-handed alpha
Helix 85	AJ4	E	1527	1533	Right-handed alpha
Helix 86	AJ5	E	1538	1542	Right-handed 310
Helix 87	AJ6	G	23	42	Right-handed alpha
Helix 88	AJ7	G	65	97	Right-handed alpha
Helix 89	AJ8	G	104	128	Right-handed alpha
Helix 90	AJ9	G	135	158	Right-handed alpha
Helix 91	AK1	G	164	192	Right-handed alpha

There are 19 sheets in PDB entry 7MJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	211	214	anti-parallel
Strand 3	A	265	266	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	202	first strand
Strand 2	A	205	209	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	248	first strand
Strand 2	A	220	231	anti-parallel
Strand 3	A	291	300	anti-parallel
Strand 4	A	306	313	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	345	346	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	335	337	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	205	212	anti-parallel
Strand 3	B	197	202	anti-parallel
Strand 4	B	318	320	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	248	first strand
Strand 2	B	221	229	anti-parallel
Strand 3	B	292	300	anti-parallel
Strand 4	B	305	313	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	D	335	338	parallel
Strand 3	D	329	330	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	318	319	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	265	268	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	248	first strand
Strand 2	C	220	230	anti-parallel
Strand 3	C	258	259	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	248	first strand
Strand 2	C	220	230	anti-parallel
Strand 3	C	291	300	anti-parallel
Strand 4	C	306	313	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	240	241	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	324	first strand
Strand 2	C	345	346	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	330	first strand
Strand 2	C	335	336	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	205	206	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	248	first strand
Strand 2	D	220	234	anti-parallel
Strand 3	D	258	259	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	248	first strand
Strand 2	D	220	234	anti-parallel
Strand 3	D	292	300	anti-parallel
Strand 4	D	305	311	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1513	1516	first strand
Strand 2	E	1519	1523	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJQ