Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MJS entry

There are 3 chains in PDB entry 7MJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 4	THR 135
L	ASP 2	ALA 114
X	LEU 36	ALA 505

There are 21 helices in PDB entry 7MJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	X	37	42	Right-handed alpha
Helix 2	AA2	X	42	47	Right-handed alpha
Helix 3	AA3	X	47	69	Right-handed alpha
Helix 4	AA4	X	73	99	Right-handed alpha
Helix 5	AA5	X	110	127	Right-handed alpha
Helix 6	AA6	X	137	162	Right-handed alpha
Helix 7	AA7	X	163	168	Right-handed alpha
Helix 8	AA8	X	170	202	Right-handed alpha
Helix 9	AA9	X	218	223	Right-handed alpha
Helix 10	AB1	X	228	264	Right-handed alpha
Helix 11	AB2	X	281	289	Right-handed alpha
Helix 12	AB3	X	291	322	Right-handed alpha
Helix 13	AB4	X	328	354	Right-handed alpha
Helix 14	AB5	X	355	366	Right-handed alpha
Helix 15	AB6	X	366	377	Right-handed alpha
Helix 16	AB7	X	380	417	Right-handed alpha
Helix 17	AB8	X	425	453	Right-handed alpha
Helix 18	AB9	X	463	473	Right-handed alpha
Helix 19	AC1	X	475	489	Right-handed alpha
Helix 20	AC2	X	490	492	Right-handed 310
Helix 21	AC3	X	497	505	Right-handed alpha

There are 6 sheets in PDB entry 7MJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	126	130	parallel
Strand 3	H	95	109	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	126	130	parallel
Strand 3	H	95	109	anti-parallel
Strand 4	H	112	122	anti-parallel
Strand 5	X	207	208	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	106	108	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	46	50	anti-parallel
Strand 3	L	33	39	anti-parallel
Strand 4	L	86	92	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJS