Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MJW entry

There are 6 chains in PDB entry 7MJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 17	GLY 457
M	G 29	A 36
M	A 38	C 41
B	ASN 17	GLY 457
G	G 29	A 36
G	A 38	C 41

There are 35 helices in PDB entry 7MJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	44	Right-handed alpha
Helix 2	AA2	A	51	55	Right-handed 310
Helix 3	AA3	A	66	84	Right-handed alpha
Helix 4	AA4	A	97	103	Right-handed alpha
Helix 5	AA5	A	104	111	Right-handed alpha
Helix 6	AA6	A	120	122	Right-handed 310
Helix 7	AA7	A	123	133	Right-handed alpha
Helix 8	AA8	A	179	184	Right-handed alpha
Helix 9	AA9	A	191	205	Right-handed alpha
Helix 10	AB1	A	216	219	Right-handed 310
Helix 11	AB2	A	232	243	Right-handed alpha
Helix 12	AB3	A	254	258	Right-handed 310
Helix 13	AB4	A	259	269	Right-handed alpha
Helix 14	AB5	A	284	291	Right-handed alpha
Helix 15	AB6	A	296	311	Right-handed alpha
Helix 16	AB7	A	328	343	Right-handed alpha
Helix 17	AB8	A	358	364	Right-handed alpha
Helix 18	AB9	A	369	395	Right-handed alpha
Helix 19	AC1	B	27	43	Right-handed alpha
Helix 20	AC2	B	66	84	Right-handed alpha
Helix 21	AC3	B	97	103	Right-handed alpha
Helix 22	AC4	B	104	111	Right-handed alpha
Helix 23	AC5	B	120	122	Right-handed 310
Helix 24	AC6	B	123	133	Right-handed alpha
Helix 25	AC7	B	179	184	Right-handed alpha
Helix 26	AC8	B	191	205	Right-handed alpha
Helix 27	AC9	B	216	219	Right-handed 310
Helix 28	AD1	B	232	243	Right-handed alpha
Helix 29	AD2	B	254	258	Right-handed 310
Helix 30	AD3	B	259	269	Right-handed alpha
Helix 31	AD4	B	284	291	Right-handed alpha
Helix 32	AD5	B	296	311	Right-handed alpha
Helix 33	AD6	B	328	343	Right-handed alpha
Helix 34	AD7	B	358	364	Right-handed alpha
Helix 35	AD8	B	369	394	Right-handed alpha

There are 12 sheets in PDB entry 7MJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	19	24	parallel
Strand 3	A	57	62	parallel
Strand 4	A	91	96	parallel
Strand 5	A	114	116	parallel
Strand 6	A	137	139	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	209	213	parallel
Strand 3	A	247	251	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	188	189	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	229	231	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	315	322	parallel
Strand 3	A	346	351	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	408	first strand
Strand 2	A	411	418	anti-parallel
Strand 3	A	424	428	anti-parallel
Strand 4	A	450	454	parallel
Strand 5	A	437	445	anti-parallel
Strand 6	A	399	408	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	18	24	parallel
Strand 3	B	57	62	parallel
Strand 4	B	91	96	parallel
Strand 5	B	114	116	parallel
Strand 6	B	137	139	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	209	213	parallel
Strand 3	B	247	251	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	188	189	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	229	231	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	315	322	parallel
Strand 3	B	346	351	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	407	first strand
Strand 2	B	414	418	anti-parallel
Strand 3	B	424	428	anti-parallel
Strand 4	B	450	454	parallel
Strand 5	B	437	445	anti-parallel
Strand 6	B	399	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJW