Analysis of interatomic Contacts of Structural Units in PDB entry:
7MJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MJY entry

There are 2 chains in PDB entry 7MJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10GLY 457
M
 U 33 C 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7MJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 44Right-handed alpha
Helix 2
AA2
A
51 55Right-handed 310
Helix 3
AA3
A
66 87Right-handed alpha
Helix 4
AA4
A
97 103Right-handed alpha
Helix 5
AA5
A
104 111Right-handed alpha
Helix 6
AA6
A
120 122Right-handed 310
Helix 7
AA7
A
123 133Right-handed alpha
Helix 8
AA8
A
179 184Right-handed alpha
Helix 9
AA9
A
191 205Right-handed alpha
Helix 10
AB1
A
216 219Right-handed 310
Helix 11
AB2
A
232 243Right-handed alpha
Helix 12
AB3
A
254 258Right-handed 310
Helix 13
AB4
A
259 269Right-handed alpha
Helix 14
AB5
A
284 291Right-handed alpha
Helix 15
AB6
A
296 311Right-handed alpha
Helix 16
AB7
A
328 343Right-handed alpha
Helix 17
AB8
A
358 364Right-handed alpha
Helix 18
AB9
A
369 395Right-handed alpha
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There are 6 sheets in PDB entry 7MJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
18 24parallel
Strand 3
A
57 62parallel
Strand 4
A
91 96parallel
Strand 5
A
114 116parallel
Strand 6
A
137 139parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 166first strand
Strand 2
A
209 213parallel
Strand 3
A
247 251parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
188 189anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
229 231anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
315 322parallel
Strand 3
A
346 351parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 407first strand
Strand 2
A
414 419anti-parallel
Strand 3
A
424 428anti-parallel
Strand 4
A
450 454parallel
Strand 5
A
437 444anti-parallel
Strand 6
A
399 407anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il