Analysis of interatomic Contacts of Structural Units in PDB entry:
7MK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MK1 entry

There are 26 chains in PDB entry 7MK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 803MET 923
B
 LYS 803MET 923
C
 A 1 C 5
C
 G 7 G 7
C
 G 9 G 9
C
 C 11 A 12
C
 G 14 G 14
C
 G 16 G 16
C
 A 21 A 22
C
 G 24 G 24
C
 C 26 G 28
C
 A 32 A 33
C
 G 35 A 36
C
 G 38 G 41
D
 A 1 C 5
D
 G 7 G 7
D
 G 9 G 9
D
 C 11 A 12
D
 G 14 G 14
D
 G 16 G 16
D
 A 21 A 22
D
 G 24 G 24
D
 C 26 G 28
D
 A 32 A 33
D
 G 35 A 36
D
 G 38 G 41
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 7MK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
835 840Right-handed alpha
Helix 2
AA2
A
907 911Right-handed 310
Helix 3
AA3
A
919 923Right-handed 310
Helix 4
AA4
B
835 841Right-handed alpha
Helix 5
AA5
B
907 911Right-handed 310
Helix 6
AA6
B
919 923Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 7MK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
806 810anti-parallel
Strand 3
A
892 896anti-parallel
Strand 4
A
902 903anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 826first strand
Strand 2
A
830 833anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
856 864anti-parallel
Strand 3
A
852 853anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
856 864anti-parallel
Strand 3
A
872 879anti-parallel
Strand 4
A
882 887anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
816 819first strand
Strand 2
B
806 810anti-parallel
Strand 3
B
892 896anti-parallel
Strand 4
B
902 903anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
823 826first strand
Strand 2
B
830 833anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
842 846first strand
Strand 2
B
856 864anti-parallel
Strand 3
B
852 853anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
842 846first strand
Strand 2
B
856 864anti-parallel
Strand 3
B
872 879anti-parallel
Strand 4
B
882 887anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il