Analysis of interatomic Contacts of Structural Units in PDB entry:
7MK9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MK9 entry

There are 15 chains in PDB entry 7MK9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	C -9	A 31
O	T -31	G 9
A	VAL 2	MET 1454
B	ASP 20	ASP 1223
C	GLU 4	ASP 268
D	ARG 14	TYR 221
E	ASP 2	MET 215
F	LEU 69	LEU 155
G	MET 1	ILE 171
H	MET 1	ARG 146
I	THR 2	LYS 115
J	MET 1	LEU 66
K	MET 1	ALA 115
L	LEU 27	ARG 70
R	C 4	C 4

There are145 helices in PDB entry 7MK9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	92	94	Right-handed 310
Helix 3	AA3	A	95	105	Right-handed alpha
Helix 4	AA4	A	119	128	Right-handed alpha
Helix 5	AA5	A	132	142	Right-handed alpha
Helix 6	AA6	A	203	213	Right-handed alpha
Helix 7	AA7	A	215	222	Right-handed alpha
Helix 8	AA8	A	230	235	Right-handed 310
Helix 9	AA9	A	243	247	Right-handed 310
Helix 10	AB1	A	260	282	Right-handed alpha
Helix 11	AB2	A	287	305	Right-handed alpha
Helix 12	AB3	A	324	330	Right-handed alpha
Helix 13	AB4	A	368	374	Right-handed alpha
Helix 14	AB5	A	384	395	Right-handed alpha
Helix 15	AB6	A	474	479	Right-handed alpha
Helix 16	AB7	A	494	505	Right-handed alpha
Helix 17	AB8	A	506	511	Right-handed 310
Helix 18	AB9	A	524	535	Right-handed alpha
Helix 19	AC1	A	542	553	Right-handed alpha
Helix 20	AC2	A	573	582	Right-handed alpha
Helix 21	AC3	A	618	623	Right-handed alpha
Helix 22	AC4	A	628	637	Right-handed alpha
Helix 23	AC5	A	640	661	Right-handed alpha
Helix 24	AC6	A	665	670	Right-handed alpha
Helix 25	AC7	A	672	699	Right-handed alpha
Helix 26	AC8	A	709	737	Right-handed alpha
Helix 27	AC9	A	741	749	Right-handed alpha
Helix 28	AD1	A	754	763	Right-handed alpha
Helix 29	AD2	A	809	845	Right-handed alpha
Helix 30	AD3	A	867	871	Right-handed 310
Helix 31	AD4	A	889	898	Right-handed alpha
Helix 32	AD5	A	913	917	Right-handed 310
Helix 33	AD6	A	923	947	Right-handed alpha
Helix 34	AD7	A	960	972	Right-handed alpha
Helix 35	AD8	A	982	997	Right-handed alpha
Helix 36	AD9	A	1004	1015	Right-handed alpha
Helix 37	AE1	A	1015	1026	Right-handed alpha
Helix 38	AE2	A	1027	1035	Right-handed alpha
Helix 39	AE3	A	1038	1056	Right-handed alpha
Helix 40	AE4	A	1063	1074	Right-handed alpha
Helix 41	AE5	A	1075	1077	Right-handed 310
Helix 42	AE6	A	1096	1106	Right-handed alpha
Helix 43	AE7	A	1127	1139	Right-handed alpha
Helix 44	AE8	A	1142	1146	Right-handed alpha
Helix 45	AE9	A	1163	1166	Right-handed 310
Helix 46	AF1	A	1167	1174	Right-handed alpha
Helix 47	AF2	A	1198	1205	Right-handed alpha
Helix 48	AF3	A	1208	1221	Right-handed alpha
Helix 49	AF4	A	1255	1271	Right-handed alpha
Helix 50	AF5	A	1331	1339	Right-handed alpha
Helix 51	AF6	A	1340	1358	Right-handed alpha
Helix 52	AF7	A	1364	1377	Right-handed alpha
Helix 53	AF8	A	1395	1401	Right-handed alpha
Helix 54	AF9	A	1404	1416	Right-handed alpha
Helix 55	AG1	A	1423	1431	Right-handed alpha
Helix 56	AG2	A	1436	1439	Right-handed 310
Helix 57	AG3	A	1446	1453	Right-handed alpha
Helix 58	AG4	B	26	28	Right-handed 310
Helix 59	AG5	B	29	42	Right-handed alpha
Helix 60	AG6	B	44	57	Right-handed alpha
Helix 61	AG7	B	59	66	Right-handed alpha
Helix 62	AG8	B	113	121	Right-handed alpha
Helix 63	AG9	B	179	184	Right-handed 310
Helix 64	AH1	B	185	192	Right-handed alpha
Helix 65	AH2	B	282	290	Right-handed alpha
Helix 66	AH3	B	293	302	Right-handed alpha
Helix 67	AH4	B	308	321	Right-handed alpha
Helix 68	AH5	B	326	332	Right-handed alpha
Helix 69	AH6	B	348	359	Right-handed alpha
Helix 70	AH7	B	370	390	Right-handed alpha
Helix 71	AH8	B	408	430	Right-handed alpha
Helix 72	AH9	B	444	464	Right-handed alpha
Helix 73	AI1	B	487	496	Right-handed alpha
Helix 74	AI2	B	515	519	Right-handed 310
Helix 75	AI3	B	551	561	Right-handed alpha
Helix 76	AI4	B	567	569	Right-handed 310
Helix 77	AI5	B	592	606	Right-handed alpha
Helix 78	AI6	B	654	667	Right-handed alpha
Helix 79	AI7	B	680	687	Right-handed alpha
Helix 80	AI8	B	696	701	Right-handed 310
Helix 81	AI9	B	744	749	Right-handed 310
Helix 82	AJ1	B	750	755	Right-handed alpha
Helix 83	AJ2	B	758	762	Right-handed 310
Helix 84	AJ3	B	763	775	Right-handed alpha
Helix 85	AJ4	B	783	787	Right-handed 310
Helix 86	AJ5	B	807	812	Right-handed alpha
Helix 87	AJ6	B	843	849	Right-handed alpha
Helix 88	AJ7	B	889	893	Right-handed 310
Helix 89	AJ8	B	995	999	Right-handed 310
Helix 90	AJ9	B	1015	1021	Right-handed alpha
Helix 91	AK1	B	1023	1039	Right-handed alpha
Helix 92	AK2	B	1051	1062	Right-handed alpha
Helix 93	AK3	B	1098	1103	Right-handed alpha
Helix 94	AK4	B	1131	1142	Right-handed alpha
Helix 95	AK5	B	1143	1153	Right-handed alpha
Helix 96	AK6	B	1174	1178	Right-handed 310
Helix 97	AK7	B	1197	1210	Right-handed alpha
Helix 98	AK8	C	26	40	Right-handed alpha
Helix 99	AK9	C	59	68	Right-handed alpha
Helix 100	AL1	C	92	96	Right-handed 310
Helix 101	AL2	C	116	118	Right-handed 310
Helix 102	AL3	C	167	171	Right-handed 310
Helix 103	AL4	C	239	266	Right-handed alpha
Helix 104	AL5	D	51	76	Right-handed alpha
Helix 105	AL6	D	118	134	Right-handed alpha
Helix 106	AL7	D	138	152	Right-handed alpha
Helix 107	AL8	D	156	171	Right-handed alpha
Helix 108	AL9	D	173	183	Right-handed alpha
Helix 109	AM1	D	187	195	Right-handed alpha
Helix 110	AM2	D	195	202	Right-handed alpha
Helix 111	AM3	D	203	216	Right-handed alpha
Helix 112	AM4	E	3	26	Right-handed alpha
Helix 113	AM5	E	31	36	Right-handed alpha
Helix 114	AM6	E	38	46	Right-handed alpha
Helix 115	AM7	E	54	59	Right-handed alpha
Helix 116	AM8	E	65	72	Right-handed alpha
Helix 117	AM9	E	89	103	Right-handed alpha
Helix 118	AN1	E	117	121	Right-handed 310
Helix 119	AN2	E	138	141	Right-handed 310
Helix 120	AN3	E	143	147	Right-handed 310
Helix 121	AN4	E	157	169	Right-handed alpha
Helix 122	AN5	E	182	189	Right-handed alpha
Helix 123	AN6	F	86	103	Right-handed alpha
Helix 124	AN7	F	116	128	Right-handed alpha
Helix 125	AN8	G	22	35	Right-handed alpha
Helix 126	AN9	I	61	65	Right-handed 310
Helix 127	AO1	J	17	25	Right-handed alpha
Helix 128	AO2	J	31	40	Right-handed alpha
Helix 129	AO3	J	44	53	Right-handed alpha
Helix 130	AO4	J	56	62	Right-handed alpha
Helix 131	AO5	K	5	9	Right-handed 310
Helix 132	AO6	K	39	53	Right-handed alpha
Helix 133	AO7	K	82	112	Right-handed alpha
Helix 134	AO8	Q	23	35	Right-handed alpha
Helix 135	AO9	Q	107	112	Right-handed alpha
Helix 136	AP1	Q	128	133	Right-handed alpha
Helix 137	AP2	Q	152	164	Right-handed alpha
Helix 138	AP3	Q	336	347	Right-handed alpha
Helix 139	AP4	Q	405	414	Right-handed alpha
Helix 140	AP5	Q	423	432	Right-handed alpha
Helix 141	AP6	Q	436	447	Right-handed alpha
Helix 142	AP7	M	61	65	Right-handed 310
Helix 143	AP8	M	74	82	Right-handed alpha
Helix 144	AP9	M	110	113	Right-handed 310
Helix 145	AQ1	M	234	243	Right-handed alpha

There are 40 sheets in PDB entry 7MK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	17	18	anti-parallel
Strand 3	B	1215	1216	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	90	first strand
Strand 2	A	236	240	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	112	113	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	198	201	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	B	1128	1130	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1104	1106	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	486	490	anti-parallel
Strand 4	A	442	445	anti-parallel
Strand 5	A	455	463	anti-parallel
Strand 6	A	363	367	parallel
Strand 7	A	468	470	anti-parallel
Strand 8	A	348	355	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	431	434	anti-parallel
Strand 3	A	402	406	anti-parallel
Strand 4	A	412	414	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	589	first strand
Strand 2	A	605	608	anti-parallel
Strand 3	A	611	615	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel
Strand 3	A	863	865	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	882	first strand
Strand 2	A	953	956	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1283	1292	first strand
Strand 2	A	1298	1307	anti-parallel
Strand 3	A	1116	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1224	1228	first strand
Strand 2	A	1236	1242	anti-parallel
Strand 3	A	1191	1197	anti-parallel
Strand 4	A	1147	1154	anti-parallel
Strand 5	I	42	45	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	G	2	13	anti-parallel
Strand 3	G	68	79	anti-parallel
Strand 4	G	59	61	anti-parallel
Strand 5	A	1441	1445	anti-parallel
Strand 6	F	132	137	anti-parallel
Strand 7	F	143	147	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	G	2	13	anti-parallel
Strand 3	G	68	79	anti-parallel
Strand 4	G	43	48	anti-parallel
Strand 5	G	37	39	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	89	97	anti-parallel
Strand 3	B	125	133	anti-parallel
Strand 4	B	165	171	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	109	111	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	209	210	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	498	499	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	234	240	anti-parallel
Strand 3	B	254	259	anti-parallel
Strand 4	B	268	272	anti-parallel
Strand 5	B	280	281	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	547	first strand
Strand 2	B	630	635	anti-parallel
Strand 3	B	693	694	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	565	first strand
Strand 2	B	585	590	anti-parallel
Strand 3	B	578	582	anti-parallel
Strand 4	B	623	627	parallel
Strand 5	B	614	618	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	651	first strand
Strand 2	B	638	641	anti-parallel
Strand 3	B	740	741	anti-parallel
Strand 4	B	703	704	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	963	969	anti-parallel
Strand 4	B	948	955	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1069	1070	first strand
Strand 2	B	1085	1091	anti-parallel
Strand 3	B	822	827	anti-parallel
Strand 4	B	1010	1012	parallel
Strand 5	B	838	842	anti-parallel
Strand 6	B	988	994	parallel
Strand 7	B	979	981	anti-parallel
Strand 8	B	1093	1094	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1158	1162	first strand
Strand 2	B	1192	1196	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	13	first strand
Strand 2	C	17	22	anti-parallel
Strand 3	C	228	233	anti-parallel
Strand 4	C	176	179	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	97	104	anti-parallel
Strand 3	C	152	160	anti-parallel
Strand 4	C	45	54	anti-parallel
Strand 5	L	65	68	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	129	132	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	143	147	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	44	46	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	107	112	parallel
Strand 3	E	131	136	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	155	first strand
Strand 2	E	195	202	anti-parallel
Strand 3	E	206	214	anti-parallel
Strand 4	E	177	178	parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	93	first strand
Strand 2	G	100	103	anti-parallel
Strand 3	G	106	110	anti-parallel
Strand 4	G	158	162	parallel
Strand 5	G	142	151	anti-parallel
Strand 6	G	86	93	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	122	first strand
Strand 2	G	129	130	anti-parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	58	first strand
Strand 2	H	7	16	anti-parallel
Strand 3	H	24	30	anti-parallel
Strand 4	H	37	42	anti-parallel
Strand 5	H	121	125	anti-parallel
Strand 6	H	111	118	anti-parallel
Strand 7	H	95	107	anti-parallel
Strand 8	H	139	144	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	18	first strand
Strand 2	I	25	29	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	87	first strand
Strand 2	I	99	102	anti-parallel
Strand 3	I	109	111	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	63	anti-parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	102	104	first strand
Strand 2	M	91	97	anti-parallel
Strand 3	M	104	108	anti-parallel
Strand 4	M	119	126	anti-parallel
Strand 5	M	211	226	anti-parallel
Strand 6	M	67	72	parallel
Strand 7	Q	373	378	anti-parallel
Strand 8	Q	384	388	anti-parallel

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There are 12 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	102	104	first strand
Strand 2	M	91	97	anti-parallel
Strand 3	M	104	108	anti-parallel
Strand 4	M	119	126	anti-parallel
Strand 5	M	211	226	anti-parallel
Strand 6	M	132	138	anti-parallel
Strand 7	Q	115	122	anti-parallel
Strand 8	Q	391	398	parallel
Strand 9	Q	360	365	anti-parallel
Strand 10	Q	350	354	anti-parallel
Strand 11	Q	137	141	anti-parallel
Strand 12	M	208	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MK9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MK9