Analysis of interatomic Contacts of Structural Units in PDB entry:
7MKA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MKA entry

There are 15 chains in PDB entry 7MKA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	A 27	A 65
O	C -65	T -26
a	VAL 2	MET 1454
b	ASP 20	ASP 1223
c	GLU 4	ASP 268
d	ARG 14	TYR 221
e	ASP 2	MET 215
f	LEU 69	LEU 155
g	MET 1	ILE 171
h	MET 1	ARG 146
i	THR 2	LYS 115
j	MET 1	LEU 66
k	MET 1	ALA 115
l	LEU 27	ARG 70
r	A 33	C 39

There are135 helices in PDB entry 7MKA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	23	31	Right-handed alpha
Helix 2	AA2	a	92	95	Right-handed 310
Helix 3	AA3	a	96	105	Right-handed alpha
Helix 4	AA4	a	120	128	Right-handed alpha
Helix 5	AA5	a	132	142	Right-handed alpha
Helix 6	AA6	a	191	195	Right-handed 310
Helix 7	AA7	a	203	214	Right-handed alpha
Helix 8	AA8	a	215	222	Right-handed alpha
Helix 9	AA9	a	230	235	Right-handed 310
Helix 10	AB1	a	243	247	Right-handed 310
Helix 11	AB2	a	260	282	Right-handed alpha
Helix 12	AB3	a	288	305	Right-handed alpha
Helix 13	AB4	a	324	330	Right-handed alpha
Helix 14	AB5	a	368	374	Right-handed alpha
Helix 15	AB6	a	384	395	Right-handed alpha
Helix 16	AB7	a	471	473	Right-handed 310
Helix 17	AB8	a	474	479	Right-handed alpha
Helix 18	AB9	a	494	502	Right-handed alpha
Helix 19	AC1	a	506	510	Right-handed 310
Helix 20	AC2	a	524	535	Right-handed alpha
Helix 21	AC3	a	542	553	Right-handed alpha
Helix 22	AC4	a	573	581	Right-handed alpha
Helix 23	AC5	a	618	623	Right-handed alpha
Helix 24	AC6	a	628	637	Right-handed alpha
Helix 25	AC7	a	640	661	Right-handed alpha
Helix 26	AC8	a	665	669	Right-handed 310
Helix 27	AC9	a	672	699	Right-handed alpha
Helix 28	AD1	a	709	737	Right-handed alpha
Helix 29	AD2	a	741	749	Right-handed alpha
Helix 30	AD3	a	754	763	Right-handed alpha
Helix 31	AD4	a	809	843	Right-handed alpha
Helix 32	AD5	a	867	871	Right-handed 310
Helix 33	AD6	a	889	898	Right-handed alpha
Helix 34	AD7	a	909	913	Right-handed 310
Helix 35	AD8	a	922	947	Right-handed alpha
Helix 36	AD9	a	960	970	Right-handed alpha
Helix 37	AE1	a	982	997	Right-handed alpha
Helix 38	AE2	a	1004	1015	Right-handed alpha
Helix 39	AE3	a	1015	1026	Right-handed alpha
Helix 40	AE4	a	1027	1034	Right-handed alpha
Helix 41	AE5	a	1038	1056	Right-handed alpha
Helix 42	AE6	a	1063	1078	Right-handed alpha
Helix 43	AE7	a	1096	1106	Right-handed alpha
Helix 44	AE8	a	1127	1139	Right-handed alpha
Helix 45	AE9	a	1142	1146	Right-handed alpha
Helix 46	AF1	a	1167	1173	Right-handed alpha
Helix 47	AF2	a	1198	1205	Right-handed alpha
Helix 48	AF3	a	1208	1220	Right-handed alpha
Helix 49	AF4	a	1255	1269	Right-handed alpha
Helix 50	AF5	a	1315	1319	Right-handed 310
Helix 51	AF6	a	1331	1339	Right-handed alpha
Helix 52	AF7	a	1340	1358	Right-handed alpha
Helix 53	AF8	a	1364	1377	Right-handed alpha
Helix 54	AF9	a	1395	1401	Right-handed alpha
Helix 55	AG1	a	1406	1416	Right-handed alpha
Helix 56	AG2	a	1423	1431	Right-handed alpha
Helix 57	AG3	a	1436	1441	Right-handed 310
Helix 58	AG4	a	1447	1453	Right-handed alpha
Helix 59	AG5	b	27	29	Right-handed 310
Helix 60	AG6	b	30	42	Right-handed alpha
Helix 61	AG7	b	44	57	Right-handed alpha
Helix 62	AG8	b	58	66	Right-handed alpha
Helix 63	AG9	b	113	121	Right-handed alpha
Helix 64	AH1	b	179	184	Right-handed 310
Helix 65	AH2	b	185	192	Right-handed alpha
Helix 66	AH3	b	246	250	Right-handed 310
Helix 67	AH4	b	282	290	Right-handed alpha
Helix 68	AH5	b	293	302	Right-handed alpha
Helix 69	AH6	b	308	321	Right-handed alpha
Helix 70	AH7	b	322	324	Right-handed 310
Helix 71	AH8	b	326	333	Right-handed alpha
Helix 72	AH9	b	348	359	Right-handed alpha
Helix 73	AI1	b	370	390	Right-handed alpha
Helix 74	AI2	b	408	430	Right-handed alpha
Helix 75	AI3	b	444	464	Right-handed alpha
Helix 76	AI4	b	487	496	Right-handed alpha
Helix 77	AI5	b	515	519	Right-handed 310
Helix 78	AI6	b	551	561	Right-handed alpha
Helix 79	AI7	b	565	569	Right-handed 310
Helix 80	AI8	b	592	606	Right-handed alpha
Helix 81	AI9	b	654	668	Right-handed alpha
Helix 82	AJ1	b	680	688	Right-handed alpha
Helix 83	AJ2	b	695	699	Right-handed alpha
Helix 84	AJ3	b	744	749	Right-handed 310
Helix 85	AJ4	b	750	756	Right-handed alpha
Helix 86	AJ5	b	758	762	Right-handed 310
Helix 87	AJ6	b	763	775	Right-handed alpha
Helix 88	AJ7	b	807	812	Right-handed 310
Helix 89	AJ8	b	843	849	Right-handed alpha
Helix 90	AJ9	b	889	893	Right-handed 310
Helix 91	AK1	b	995	999	Right-handed 310
Helix 92	AK2	b	1014	1017	Right-handed 310
Helix 93	AK3	b	1023	1039	Right-handed alpha
Helix 94	AK4	b	1051	1063	Right-handed alpha
Helix 95	AK5	b	1099	1103	Right-handed alpha
Helix 96	AK6	b	1131	1142	Right-handed alpha
Helix 97	AK7	b	1143	1153	Right-handed alpha
Helix 98	AK8	b	1197	1210	Right-handed alpha
Helix 99	AK9	c	26	40	Right-handed alpha
Helix 100	AL1	c	59	68	Right-handed alpha
Helix 101	AL2	c	76	80	Right-handed 310
Helix 102	AL3	c	92	96	Right-handed 310
Helix 103	AL4	c	114	118	Right-handed 310
Helix 104	AL5	c	167	171	Right-handed 310
Helix 105	AL6	c	204	209	Right-handed 310
Helix 106	AL7	c	239	266	Right-handed alpha
Helix 107	AL8	d	51	75	Right-handed alpha
Helix 108	AL9	d	118	134	Right-handed alpha
Helix 109	AM1	d	138	152	Right-handed alpha
Helix 110	AM2	d	156	171	Right-handed alpha
Helix 111	AM3	d	173	179	Right-handed alpha
Helix 112	AM4	d	180	183	Right-handed 310
Helix 113	AM5	d	187	195	Right-handed alpha
Helix 114	AM6	d	195	202	Right-handed alpha
Helix 115	AM7	d	203	216	Right-handed alpha
Helix 116	AM8	e	3	26	Right-handed alpha
Helix 117	AM9	e	31	36	Right-handed alpha
Helix 118	AN1	e	38	47	Right-handed alpha
Helix 119	AN2	e	65	72	Right-handed alpha
Helix 120	AN3	e	89	104	Right-handed alpha
Helix 121	AN4	e	117	122	Right-handed alpha
Helix 122	AN5	e	157	169	Right-handed alpha
Helix 123	AN6	e	182	189	Right-handed alpha
Helix 124	AN7	f	86	103	Right-handed alpha
Helix 125	AN8	f	116	128	Right-handed alpha
Helix 126	AN9	g	14	18	Right-handed 310
Helix 127	AO1	g	21	35	Right-handed alpha
Helix 128	AO2	i	61	65	Right-handed 310
Helix 129	AO3	j	17	28	Right-handed alpha
Helix 130	AO4	j	31	40	Right-handed alpha
Helix 131	AO5	j	43	52	Right-handed alpha
Helix 132	AO6	j	56	62	Right-handed alpha
Helix 133	AO7	k	6	10	Right-handed 310
Helix 134	AO8	k	39	52	Right-handed alpha
Helix 135	AO9	k	82	112	Right-handed alpha

There are 42 sheets in PDB entry 7MKA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	1418	1419	first strand
Strand 2	a	17	18	anti-parallel
Strand 3	b	1215	1216	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	82	83	first strand
Strand 2	a	240	241	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	106	107	first strand
Strand 2	a	112	113	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	173	177	first strand
Strand 2	a	180	185	anti-parallel
Strand 3	a	198	201	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	343	344	first strand
Strand 2	b	1129	1130	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	455	458	first strand
Strand 2	a	442	445	anti-parallel
Strand 3	a	486	490	anti-parallel
Strand 4	a	348	354	anti-parallel
Strand 5	a	468	469	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	455	458	first strand
Strand 2	a	442	445	anti-parallel
Strand 3	a	486	490	anti-parallel
Strand 4	a	348	354	anti-parallel
Strand 5	b	1104	1106	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	365	367	first strand
Strand 2	a	461	463	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	376	379	first strand
Strand 2	a	431	434	anti-parallel
Strand 3	a	402	406	anti-parallel
Strand 4	a	412	414	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	512	513	first strand
Strand 2	a	518	519	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	587	589	first strand
Strand 2	a	606	608	anti-parallel
Strand 3	a	611	612	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	849	850	first strand
Strand 2	a	856	857	anti-parallel
Strand 3	a	863	865	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	1283	1292	first strand
Strand 2	a	1298	1307	anti-parallel
Strand 3	a	1116	1119	anti-parallel
Strand 4	a	1328	1329	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	1224	1228	first strand
Strand 2	a	1236	1242	anti-parallel
Strand 3	a	1191	1197	anti-parallel
Strand 4	a	1147	1154	anti-parallel
Strand 5	i	42	45	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	143	147	first strand
Strand 2	f	132	137	anti-parallel
Strand 3	a	1443	1445	anti-parallel
Strand 4	g	59	61	anti-parallel
Strand 5	g	68	79	anti-parallel
Strand 6	g	2	13	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	143	147	first strand
Strand 2	f	132	137	anti-parallel
Strand 3	a	1443	1445	anti-parallel
Strand 4	g	59	61	anti-parallel
Strand 5	g	68	79	anti-parallel
Strand 6	g	44	48	anti-parallel
Strand 7	g	37	38	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	69	73	first strand
Strand 2	b	86	97	anti-parallel
Strand 3	b	125	133	anti-parallel
Strand 4	b	165	171	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	101	103	first strand
Strand 2	b	109	111	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	203	204	first strand
Strand 2	b	209	210	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	404	407	first strand
Strand 2	b	214	218	anti-parallel
Strand 3	b	498	499	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	224	227	first strand
Strand 2	b	234	240	anti-parallel
Strand 3	b	254	259	anti-parallel
Strand 4	b	268	273	anti-parallel
Strand 5	b	276	281	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	544	545	first strand
Strand 2	b	633	641	anti-parallel
Strand 3	b	690	694	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	650	651	first strand
Strand 2	b	633	641	anti-parallel
Strand 3	b	740	741	anti-parallel
Strand 4	b	703	704	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	585	590	first strand
Strand 2	b	578	582	anti-parallel
Strand 3	b	623	627	parallel
Strand 4	b	614	618	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	792	796	first strand
Strand 2	b	853	862	anti-parallel
Strand 3	b	963	969	anti-parallel
Strand 4	b	947	955	anti-parallel
Strand 5	b	904	905	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	978	981	first strand
Strand 2	b	1085	1098	anti-parallel
Strand 3	b	821	827	anti-parallel
Strand 4	b	1010	1012	parallel
Strand 5	b	839	842	anti-parallel
Strand 6	b	990	994	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	978	981	first strand
Strand 2	b	1085	1098	anti-parallel
Strand 3	b	1069	1070	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	910	912	first strand
Strand 2	b	939	940	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	1158	1162	first strand
Strand 2	b	1192	1196	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	8	13	first strand
Strand 2	c	17	22	anti-parallel
Strand 3	c	228	233	anti-parallel
Strand 4	c	176	179	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	119	120	first strand
Strand 2	c	97	104	anti-parallel
Strand 3	c	152	160	anti-parallel
Strand 4	c	45	51	anti-parallel
Strand 5	l	67	68	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	72	74	first strand
Strand 2	c	129	132	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	111	112	first strand
Strand 2	c	146	147	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	36	37	first strand
Strand 2	d	45	46	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	60	62	first strand
Strand 2	e	78	80	anti-parallel
Strand 3	e	107	112	parallel
Strand 4	e	131	136	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	152	154	first strand
Strand 2	e	195	201	anti-parallel
Strand 3	e	211	214	anti-parallel
Strand 4	e	177	178	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	152	154	first strand
Strand 2	e	195	201	anti-parallel
Strand 3	e	207	208	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	143	147	first strand
Strand 2	g	85	93	anti-parallel
Strand 3	g	100	103	anti-parallel
Strand 4	g	106	109	anti-parallel
Strand 5	g	158	160	parallel
Strand 6	g	149	151	anti-parallel

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There are 9 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	95	98	first strand
Strand 2	h	141	145	anti-parallel
Strand 3	h	54	58	anti-parallel
Strand 4	h	7	16	anti-parallel
Strand 5	h	23	30	anti-parallel
Strand 6	h	37	43	anti-parallel
Strand 7	h	121	125	anti-parallel
Strand 8	h	111	118	anti-parallel
Strand 9	h	100	107	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	14	18	first strand
Strand 2	i	25	29	anti-parallel
Strand 3	i	36	37	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	84	87	first strand
Strand 2	i	99	102	anti-parallel
Strand 3	i	109	111	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	19	24	first strand
Strand 2	k	30	36	anti-parallel
Strand 3	k	70	77	anti-parallel
Strand 4	k	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MKA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MKA