Analysis of interatomic Contacts of Structural Units in PDB entry:
7MKI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MKI entry

There are 8 chains in PDB entry 7MKI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	T 24	T 75
G	VAL 5	VAL 237
H	GLY 3	ASP 233
I	VAL 2	ASP 1341
J	GLU 16	ALA 1375
K	ALA 2	LEU 80
L	GLU 90	LEU 611
Q	A 16	A 67

There are127 helices in PDB entry 7MKI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	35	50	Right-handed alpha
Helix 2	AA2	G	77	87	Right-handed alpha
Helix 3	AA3	G	113	115	Right-handed 310
Helix 4	AA4	G	212	228	Right-handed alpha
Helix 5	AA5	G	229	231	Right-handed 310
Helix 6	AA6	H	34	50	Right-handed alpha
Helix 7	AA7	H	77	87	Right-handed alpha
Helix 8	AA8	H	113	115	Right-handed 310
Helix 9	AA9	H	212	227	Right-handed alpha
Helix 10	AB1	I	28	39	Right-handed alpha
Helix 11	AB2	I	49	57	Right-handed alpha
Helix 12	AB3	I	81	89	Right-handed alpha
Helix 13	AB4	I	206	213	Right-handed alpha
Helix 14	AB5	I	216	225	Right-handed alpha
Helix 15	AB6	I	270	280	Right-handed alpha
Helix 16	AB7	I	288	293	Right-handed alpha
Helix 17	AB8	I	318	327	Right-handed alpha
Helix 18	AB9	I	346	354	Right-handed alpha
Helix 19	AC1	I	358	371	Right-handed alpha
Helix 20	AC2	I	377	389	Right-handed alpha
Helix 21	AC3	I	399	409	Right-handed alpha
Helix 22	AC4	I	421	438	Right-handed alpha
Helix 23	AC5	I	455	480	Right-handed alpha
Helix 24	AC6	I	495	508	Right-handed alpha
Helix 25	AC7	I	519	527	Right-handed alpha
Helix 26	AC8	I	551	555	Right-handed 310
Helix 27	AC9	I	670	674	Right-handed 310
Helix 28	AD1	I	675	686	Right-handed alpha
Helix 29	AD2	I	687	689	Right-handed 310
Helix 30	AD3	I	704	712	Right-handed alpha
Helix 31	AD4	I	738	741	Right-handed 310
Helix 32	AD5	I	820	825	Right-handed alpha
Helix 33	AD6	I	898	907	Right-handed alpha
Helix 34	AD7	I	942	979	Right-handed alpha
Helix 35	AD8	I	995	1000	Right-handed 310
Helix 36	AD9	I	1007	1038	Right-handed alpha
Helix 37	AE1	I	1109	1134	Right-handed alpha
Helix 38	AE2	I	1138	1149	Right-handed alpha
Helix 39	AE3	I	1167	1176	Right-handed alpha
Helix 40	AE4	I	1191	1202	Right-handed alpha
Helix 41	AE5	I	1238	1243	Right-handed alpha
Helix 42	AE6	I	1271	1281	Right-handed alpha
Helix 43	AE7	I	1284	1292	Right-handed alpha
Helix 44	AE8	I	1297	1310	Right-handed alpha
Helix 45	AE9	I	1321	1332	Right-handed alpha
Helix 46	AF1	J	26	33	Right-handed alpha
Helix 47	AF2	J	96	100	Right-handed 310
Helix 48	AF3	J	114	119	Right-handed alpha
Helix 49	AF4	J	124	129	Right-handed alpha
Helix 50	AF5	J	131	140	Right-handed alpha
Helix 51	AF6	J	161	172	Right-handed alpha
Helix 52	AF7	J	181	192	Right-handed alpha
Helix 53	AF8	J	193	208	Right-handed alpha
Helix 54	AF9	J	210	230	Right-handed alpha
Helix 55	AG1	J	233	236	Right-handed 310
Helix 56	AG2	J	246	250	Right-handed 310
Helix 57	AG3	J	264	286	Right-handed alpha
Helix 58	AG4	J	288	301	Right-handed alpha
Helix 59	AG5	J	303	306	Right-handed 310
Helix 60	AG6	J	327	332	Right-handed alpha
Helix 61	AG7	J	336	341	Right-handed alpha
Helix 62	AG8	J	370	377	Right-handed alpha
Helix 63	AG9	J	377	388	Right-handed alpha
Helix 64	AH1	J	393	403	Right-handed alpha
Helix 65	AH2	J	407	417	Right-handed alpha
Helix 66	AH3	J	430	432	Right-handed 310
Helix 67	AH4	J	450	452	Right-handed 310
Helix 68	AH5	J	453	458	Right-handed alpha
Helix 69	AH6	J	473	483	Right-handed alpha
Helix 70	AH7	J	485	489	Right-handed 310
Helix 71	AH8	J	504	514	Right-handed alpha
Helix 72	AH9	J	529	539	Right-handed alpha
Helix 73	AI1	J	573	580	Right-handed alpha
Helix 74	AI2	J	598	612	Right-handed alpha
Helix 75	AI3	J	614	636	Right-handed alpha
Helix 76	AI4	J	640	644	Right-handed 310
Helix 77	AI5	J	649	669	Right-handed alpha
Helix 78	AI6	J	674	702	Right-handed alpha
Helix 79	AI7	J	720	728	Right-handed alpha
Helix 80	AI8	J	768	775	Right-handed alpha
Helix 81	AI9	J	776	804	Right-handed alpha
Helix 82	AJ1	J	834	840	Right-handed alpha
Helix 83	AJ2	J	865	876	Right-handed alpha
Helix 84	AJ3	J	895	900	Right-handed alpha
Helix 85	AJ4	J	915	925	Right-handed alpha
Helix 86	AJ5	J	926	929	Right-handed 310
Helix 87	AJ6	J	1068	1072	Right-handed 310
Helix 88	AJ7	J	1137	1146	Right-handed alpha
Helix 89	AJ8	J	1216	1225	Right-handed alpha
Helix 90	AJ9	J	1225	1245	Right-handed alpha
Helix 91	AK1	J	1250	1261	Right-handed alpha
Helix 92	AK2	J	1282	1294	Right-handed alpha
Helix 93	AK3	J	1308	1315	Right-handed alpha
Helix 94	AK4	J	1319	1324	Right-handed alpha
Helix 95	AK5	J	1327	1338	Right-handed alpha
Helix 96	AK6	J	1347	1354	Right-handed alpha
Helix 97	AK7	J	1362	1373	Right-handed alpha
Helix 98	AK8	K	6	13	Right-handed alpha
Helix 99	AK9	K	17	32	Right-handed alpha
Helix 100	AL1	K	45	57	Right-handed alpha
Helix 101	AL2	K	60	77	Right-handed alpha
Helix 102	AL3	K	78	80	Right-handed 310
Helix 103	AL4	L	98	108	Right-handed alpha
Helix 104	AL5	L	112	136	Right-handed alpha
Helix 105	AL6	L	137	153	Right-handed alpha
Helix 106	AL7	L	157	162	Right-handed alpha
Helix 107	AL8	L	215	235	Right-handed alpha
Helix 108	AL9	L	246	259	Right-handed alpha
Helix 109	AM1	L	262	290	Right-handed alpha
Helix 110	AM2	L	298	307	Right-handed alpha
Helix 111	AM3	L	313	318	Right-handed alpha
Helix 112	AM4	L	319	323	Right-handed 310
Helix 113	AM5	L	329	332	Right-handed 310
Helix 114	AM6	L	333	352	Right-handed alpha
Helix 115	AM7	L	354	392	Right-handed alpha
Helix 116	AM8	L	400	418	Right-handed alpha
Helix 117	AM9	L	420	424	Right-handed 310
Helix 118	AN1	L	426	447	Right-handed alpha
Helix 119	AN2	L	453	475	Right-handed alpha
Helix 120	AN3	L	479	487	Right-handed alpha
Helix 121	AN4	L	492	501	Right-handed alpha
Helix 122	AN5	L	518	522	Right-handed 310
Helix 123	AN6	L	530	550	Right-handed alpha
Helix 124	AN7	L	552	563	Right-handed alpha
Helix 125	AN8	L	572	580	Right-handed alpha
Helix 126	AN9	L	583	599	Right-handed alpha
Helix 127	AO1	L	603	609	Right-handed alpha

There are 52 sheets in PDB entry 7MKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	17	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	183	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	17	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	186	189	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	53	first strand
Strand 2	G	149	150	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	99	first strand
Strand 2	G	145	147	anti-parallel
Strand 3	G	56	59	anti-parallel
Strand 4	G	171	172	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	92	first strand
Strand 2	G	121	123	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	105	first strand
Strand 2	G	139	142	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	129	133	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	17	first strand
Strand 2	H	25	31	anti-parallel
Strand 3	H	199	203	anti-parallel
Strand 4	H	185	187	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	99	first strand
Strand 2	H	142	149	anti-parallel
Strand 3	H	53	61	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	121	123	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	105	first strand
Strand 2	H	139	140	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	110	111	first strand
Strand 2	H	129	131	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	175	176	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	180	182	first strand
Strand 2	H	206	207	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	66	75	anti-parallel
Strand 3	I	93	104	anti-parallel
Strand 4	I	116	128	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	147	148	first strand
Strand 2	I	530	531	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	159	first strand
Strand 2	I	172	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	198	anti-parallel
Strand 5	I	204	205	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	284	286	first strand
Strand 2	I	238	240	anti-parallel
Strand 3	I	227	231	anti-parallel
Strand 4	I	332	336	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	256	257	first strand
Strand 2	I	260	261	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	301	302	first strand
Strand 2	I	309	311	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	599	607	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	652	653	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	633	635	first strand
Strand 2	I	644	646	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	716	717	first strand
Strand 2	I	782	785	anti-parallel
Strand 3	I	768	769	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	750	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	727	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	798	800	first strand
Strand 2	I	1230	1232	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1076	1080	first strand
Strand 2	I	816	819	parallel
Strand 3	I	1096	1098	anti-parallel
Strand 4	I	802	804	parallel
Strand 5	I	1225	1227	anti-parallel
Strand 6	I	1209	1210	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	830	833	first strand
Strand 2	I	1046	1058	anti-parallel
Strand 3	I	836	841	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	830	833	first strand
Strand 2	I	1046	1058	anti-parallel
Strand 3	I	927	935	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	887	889	first strand
Strand 2	I	913	915	anti-parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	424	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel
Strand 7	J	447	448	anti-parallel
Strand 8	J	350	356	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1268	1270	first strand
Strand 2	J	345	347	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1340	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	37	first strand
Strand 2	J	102	112	parallel
Strand 3	J	238	244	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	159	160	first strand
Strand 2	J	144	146	anti-parallel
Strand 3	J	178	179	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	252	254	first strand
Strand 2	J	260	262	anti-parallel
Strand 3	L	505	506	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	548	550	parallel
Strand 3	J	570	572	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	553	556	first strand
Strand 2	J	564	567	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	822	first strand
Strand 2	J	880	882	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	825	826	first strand
Strand 2	J	831	833	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	949	951	first strand
Strand 2	J	1016	1019	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	991	996	first strand
Strand 2	J	981	985	anti-parallel
Strand 3	J	956	961	anti-parallel
Strand 4	J	1010	1011	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	965	967	first strand
Strand 2	J	973	975	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1034	1036	first strand
Strand 2	J	1079	1081	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1046	1048	first strand
Strand 2	J	1059	1061	anti-parallel
Strand 3	J	1106	1107	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1162	1164	first strand
Strand 2	J	1176	1178	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1173	1174	first strand
Strand 2	J	1189	1190	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1268	anti-parallel
Strand 3	J	1301	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MKI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MKI