Analysis of interatomic Contacts of Structural Units in PDB entry:
7MKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MKU entry

There are 2 chains in PDB entry 7MKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7SER 308
B
 GLU 7SER 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7MKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 16Right-handed alpha
Helix 2
AA2
A
26 37Right-handed alpha
Helix 3
AA3
A
46 51Right-handed alpha
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
65 74Right-handed 310
Helix 6
AA6
A
75 80Right-handed alpha
Helix 7
AA7
A
89 91Right-handed 310
Helix 8
AA8
A
198 204Right-handed alpha
Helix 9
AA9
A
205 207Right-handed 310
Helix 10
AB1
A
210 214Right-handed 310
Helix 11
AB2
A
215 222Right-handed alpha
Helix 12
AB3
A
230 246Right-handed alpha
Helix 13
AB4
A
250 252Right-handed 310
Helix 14
AB5
B
9 16Right-handed alpha
Helix 15
AB6
B
26 37Right-handed alpha
Helix 16
AB7
B
46 51Right-handed alpha
Helix 17
AB8
B
58 62Right-handed 310
Helix 18
AB9
B
65 74Right-handed 310
Helix 19
AC1
B
75 80Right-handed alpha
Helix 20
AC2
B
89 91Right-handed 310
Helix 21
AC3
B
198 204Right-handed alpha
Helix 22
AC4
B
205 207Right-handed 310
Helix 23
AC5
B
210 214Right-handed 310
Helix 24
AC6
B
215 222Right-handed alpha
Helix 25
AC7
B
230 246Right-handed alpha
Helix 26
AC8
B
250 252Right-handed 310
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There are 4 sheets in PDB entry 7MKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
110 124anti-parallel
Strand 3
A
127 138anti-parallel
Strand 4
A
144 154anti-parallel
Strand 5
A
93 102anti-parallel
Strand 6
A
254 261anti-parallel
Strand 7
A
293 302anti-parallel
Strand 8
A
281 288anti-parallel
Strand 9
A
270 278anti-parallel
Strand 10
A
189 194anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
110 124anti-parallel
Strand 3
A
168 170anti-parallel
Strand 4
B
304 305anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
B
168 170anti-parallel
Strand 3
B
110 124anti-parallel
Strand 4
B
21 25anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
B
168 170anti-parallel
Strand 3
B
110 124anti-parallel
Strand 4
B
127 138anti-parallel
Strand 5
B
144 154anti-parallel
Strand 6
B
93 102anti-parallel
Strand 7
B
254 261anti-parallel
Strand 8
B
293 302anti-parallel
Strand 9
B
281 288anti-parallel
Strand 10
B
270 278anti-parallel
Strand 11
B
189 194anti-parallel
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