Analysis of interatomic Contacts of Structural Units in PDB entry:
7MKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MKV entry

There are 9 chains in PDB entry 7MKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 31LEU 146
A
 HIS 148TYR 257
A
 LEU 259ARG 437
B
 THR 31LEU 146
B
 HIS 148TYR 257
B
 LEU 259ARG 437
C
 PRO 32LEU 146
C
 HIS 148TYR 257
C
 LEU 259ARG 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 64 helices in PDB entry 7MKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 44Right-handed alpha
Helix 2
AA2
A
45 51Right-handed 310
Helix 3
AA3
A
65 78Right-handed alpha
Helix 4
AA4
A
86 107Right-handed alpha
Helix 5
AA5
A
110 112Right-handed 310
Helix 6
AA6
A
119 132Right-handed alpha
Helix 7
AA7
A
133 135Right-handed 310
Helix 8
AA8
A
148 163Right-handed alpha
Helix 9
AA9
A
184 189Right-handed alpha
Helix 10
AB1
A
190 192Right-handed 310
Helix 11
AB2
A
213 222Right-handed alpha
Helix 12
AB3
A
243 248Right-handed alpha
Helix 13
AB4
A
257 259Right-handed 310
Helix 14
AB5
A
270 278Right-handed alpha
Helix 15
AB6
A
290 296Right-handed alpha
Helix 16
AB7
A
301 306Right-handed alpha
Helix 17
AB8
A
307 317Right-handed alpha
Helix 18
AB9
A
320 341Right-handed alpha
Helix 19
AC1
A
371 383Right-handed alpha
Helix 20
AC2
A
394 401Right-handed alpha
Helix 21
AC3
A
420 437Right-handed alpha
Helix 22
AC4
B
38 44Right-handed alpha
Helix 23
AC5
B
45 51Right-handed 310
Helix 24
AC6
B
57 61Right-handed 310
Helix 25
AC7
B
65 77Right-handed alpha
Helix 26
AC8
B
86 107Right-handed alpha
Helix 27
AC9
B
110 112Right-handed 310
Helix 28
AD1
B
119 132Right-handed alpha
Helix 29
AD2
B
133 135Right-handed 310
Helix 30
AD3
B
148 163Right-handed alpha
Helix 31
AD4
B
184 189Right-handed alpha
Helix 32
AD5
B
190 192Right-handed 310
Helix 33
AD6
B
213 222Right-handed alpha
Helix 34
AD7
B
243 248Right-handed alpha
Helix 35
AD8
B
257 259Right-handed 310
Helix 36
AD9
B
270 278Right-handed alpha
Helix 37
AE1
B
290 296Right-handed alpha
Helix 38
AE2
B
301 306Right-handed alpha
Helix 39
AE3
B
307 317Right-handed alpha
Helix 40
AE4
B
320 342Right-handed alpha
Helix 41
AE5
B
371 383Right-handed alpha
Helix 42
AE6
B
394 401Right-handed alpha
Helix 43
AE7
B
420 437Right-handed alpha
Helix 44
AE8
C
38 44Right-handed alpha
Helix 45
AE9
C
45 51Right-handed 310
Helix 46
AF1
C
65 78Right-handed alpha
Helix 47
AF2
C
86 107Right-handed alpha
Helix 48
AF3
C
110 112Right-handed 310
Helix 49
AF4
C
119 132Right-handed alpha
Helix 50
AF5
C
133 135Right-handed 310
Helix 51
AF6
C
148 163Right-handed alpha
Helix 52
AF7
C
184 189Right-handed alpha
Helix 53
AF8
C
190 192Right-handed 310
Helix 54
AF9
C
213 222Right-handed alpha
Helix 55
AG1
C
243 248Right-handed alpha
Helix 56
AG2
C
257 259Right-handed 310
Helix 57
AG3
C
270 278Right-handed alpha
Helix 58
AG4
C
290 296Right-handed alpha
Helix 59
AG5
C
301 306Right-handed alpha
Helix 60
AG6
C
307 317Right-handed alpha
Helix 61
AG7
C
320 340Right-handed alpha
Helix 62
AG8
C
371 383Right-handed alpha
Helix 63
AG9
C
394 401Right-handed alpha
Helix 64
AH1
C
420 437Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 7MKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
385 386parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
265 269anti-parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
228 232parallel
Strand 5
A
196 202parallel
Strand 6
A
140 144parallel
Strand 7
A
167 169parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
177 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
410 414anti-parallel
Strand 4
A
388 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
385 386parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 117first strand
Strand 2
B
265 269anti-parallel
Strand 3
B
251 255anti-parallel
Strand 4
B
228 232parallel
Strand 5
B
196 202parallel
Strand 6
B
140 144parallel
Strand 7
B
167 169parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
177 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 349first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
410 414anti-parallel
Strand 4
B
388 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 55first strand
Strand 2
C
385 386parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 117first strand
Strand 2
C
265 269anti-parallel
Strand 3
C
251 255anti-parallel
Strand 4
C
228 232parallel
Strand 5
C
196 202parallel
Strand 6
C
140 144parallel
Strand 7
C
167 169parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
177 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
346 348first strand
Strand 2
C
362 367anti-parallel
Strand 3
C
410 414anti-parallel
Strand 4
C
388 390anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il