Analysis of interatomic Contacts of Structural Units in PDB entry:
7ML3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ML3 entry

There are 10 chains in PDB entry 7ML3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
3	GLU 8	MET 145
2	LYS 7	ARG 507
0	MET 1	GLN 754
1	SER 168	ASN 639
4	SER 22	LYS 323
6	LYS 107	LYS 457
5	ALA 2	ASP 67
7	PRO 101	LYS 766
N	C 51	G 80
T	C 86	G 115

There are127 helices in PDB entry 7ML3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	3	39	49	Right-handed alpha
Helix 2	AA2	3	75	92	Right-handed alpha
Helix 3	AA3	3	102	123	Right-handed alpha
Helix 4	AA4	3	129	145	Right-handed alpha
Helix 5	AA5	2	9	17	Right-handed alpha
Helix 6	AA6	2	18	26	Right-handed alpha
Helix 7	AA7	2	28	38	Right-handed alpha
Helix 8	AA8	2	40	51	Right-handed alpha
Helix 9	AA9	2	58	66	Right-handed alpha
Helix 10	AB1	2	70	84	Right-handed alpha
Helix 11	AB2	2	101	113	Right-handed alpha
Helix 12	AB3	2	117	122	Right-handed 310
Helix 13	AB4	2	135	152	Right-handed alpha
Helix 14	AB5	2	160	170	Right-handed alpha
Helix 15	AB6	2	185	194	Right-handed alpha
Helix 16	AB7	2	196	211	Right-handed alpha
Helix 17	AB8	2	217	231	Right-handed alpha
Helix 18	AB9	2	243	256	Right-handed alpha
Helix 19	AC1	2	272	281	Right-handed alpha
Helix 20	AC2	2	353	363	Right-handed alpha
Helix 21	AC3	2	379	389	Right-handed alpha
Helix 22	AC4	2	394	401	Right-handed alpha
Helix 23	AC5	2	404	407	Right-handed 310
Helix 24	AC6	2	408	417	Right-handed alpha
Helix 25	AC7	2	421	426	Right-handed alpha
Helix 26	AC8	2	434	448	Right-handed alpha
Helix 27	AC9	2	464	479	Right-handed alpha
Helix 28	AD1	2	495	507	Right-handed alpha
Helix 29	AD2	0	18	34	Right-handed alpha
Helix 30	AD3	0	47	63	Right-handed alpha
Helix 31	AD4	0	75	98	Right-handed alpha
Helix 32	AD5	0	110	115	Right-handed alpha
Helix 33	AD6	0	117	122	Right-handed alpha
Helix 34	AD7	0	125	137	Right-handed alpha
Helix 35	AD8	0	140	148	Right-handed alpha
Helix 36	AD9	0	157	166	Right-handed alpha
Helix 37	AE1	0	167	169	Right-handed 310
Helix 38	AE2	0	177	188	Right-handed alpha
Helix 39	AE3	0	191	200	Right-handed alpha
Helix 40	AE4	0	209	215	Right-handed alpha
Helix 41	AE5	0	223	228	Right-handed alpha
Helix 42	AE6	0	237	239	Right-handed 310
Helix 43	AE7	0	240	248	Right-handed alpha
Helix 44	AE8	0	253	278	Right-handed alpha
Helix 45	AE9	0	279	291	Right-handed alpha
Helix 46	AF1	0	294	299	Right-handed alpha
Helix 47	AF2	0	322	326	Right-handed 310
Helix 48	AF3	0	327	345	Right-handed alpha
Helix 49	AF4	0	355	367	Right-handed alpha
Helix 50	AF5	0	370	376	Right-handed alpha
Helix 51	AF6	0	376	388	Right-handed alpha
Helix 52	AF7	0	393	412	Right-handed alpha
Helix 53	AF8	0	424	428	Right-handed 310
Helix 54	AF9	0	441	453	Right-handed alpha
Helix 55	AG1	0	467	473	Right-handed alpha
Helix 56	AG2	0	515	533	Right-handed alpha
Helix 57	AG3	0	543	557	Right-handed alpha
Helix 58	AG4	0	558	567	Right-handed alpha
Helix 59	AG5	0	575	592	Right-handed alpha
Helix 60	AG6	0	605	610	Right-handed alpha
Helix 61	AG7	0	633	646	Right-handed alpha
Helix 62	AG8	0	649	667	Right-handed alpha
Helix 63	AG9	0	668	670	Right-handed 310
Helix 64	AH1	0	683	688	Right-handed 310
Helix 65	AH2	0	689	693	Right-handed 310
Helix 66	AH3	0	694	700	Right-handed alpha
Helix 67	AH4	0	702	706	Right-handed 310
Helix 68	AH5	0	709	725	Right-handed alpha
Helix 69	AH6	0	733	739	Right-handed alpha
Helix 70	AH7	0	743	753	Right-handed alpha
Helix 71	AH8	1	170	176	Right-handed alpha
Helix 72	AH9	1	177	188	Right-handed alpha
Helix 73	AI1	1	188	200	Right-handed alpha
Helix 74	AI2	1	205	225	Right-handed alpha
Helix 75	AI3	1	230	237	Right-handed alpha
Helix 76	AI4	1	251	263	Right-handed alpha
Helix 77	AI5	1	263	273	Right-handed alpha
Helix 78	AI6	1	279	295	Right-handed alpha
Helix 79	AI7	1	309	329	Right-handed alpha
Helix 80	AI8	1	338	343	Right-handed alpha
Helix 81	AI9	1	371	388	Right-handed alpha
Helix 82	AJ1	1	467	483	Right-handed alpha
Helix 83	AJ2	1	496	514	Right-handed alpha
Helix 84	AJ3	1	540	567	Right-handed alpha
Helix 85	AJ4	1	575	605	Right-handed alpha
Helix 86	AJ5	1	606	639	Right-handed alpha
Helix 87	AJ6	4	35	43	Right-handed alpha
Helix 88	AJ7	4	50	68	Right-handed alpha
Helix 89	AJ8	4	116	135	Right-handed alpha
Helix 90	AJ9	4	148	167	Right-handed alpha
Helix 91	AK1	4	192	207	Right-handed alpha
Helix 92	AK2	4	221	232	Right-handed alpha
Helix 93	AK3	4	244	252	Right-handed alpha
Helix 94	AK4	4	313	321	Right-handed alpha
Helix 95	AK5	6	133	138	Right-handed alpha
Helix 96	AK6	6	144	164	Right-handed alpha
Helix 97	AK7	6	188	202	Right-handed alpha
Helix 98	AK8	6	209	221	Right-handed alpha
Helix 99	AK9	6	246	257	Right-handed alpha
Helix 100	AL1	6	270	281	Right-handed alpha
Helix 101	AL2	6	293	306	Right-handed alpha
Helix 102	AL3	6	373	382	Right-handed alpha
Helix 103	AL4	6	437	447	Right-handed alpha
Helix 104	AL5	6	451	456	Right-handed alpha
Helix 105	AL6	5	13	27	Right-handed alpha
Helix 106	AL7	5	46	63	Right-handed alpha
Helix 107	AL8	7	105	109	Right-handed 310
Helix 108	AL9	7	149	161	Right-handed alpha
Helix 109	AM1	7	176	187	Right-handed alpha
Helix 110	AM2	7	189	201	Right-handed alpha
Helix 111	AM3	7	207	219	Right-handed alpha
Helix 112	AM4	7	363	375	Right-handed alpha
Helix 113	AM5	7	391	404	Right-handed alpha
Helix 114	AM6	7	413	425	Right-handed alpha
Helix 115	AM7	7	468	480	Right-handed alpha
Helix 116	AM8	7	494	506	Right-handed alpha
Helix 117	AM9	7	526	532	Right-handed alpha
Helix 118	AN1	7	539	544	Right-handed alpha
Helix 119	AN2	7	562	572	Right-handed alpha
Helix 120	AN3	7	576	583	Right-handed alpha
Helix 121	AN4	7	584	602	Right-handed alpha
Helix 122	AN5	7	612	623	Right-handed alpha
Helix 123	AN6	7	633	645	Right-handed alpha
Helix 124	AN7	7	655	659	Right-handed 310
Helix 125	AN8	7	679	691	Right-handed alpha
Helix 126	AN9	7	715	729	Right-handed alpha
Helix 127	AO1	7	752	765	Right-handed alpha

There are 16 sheets in PDB entry 7ML3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	87	88	first strand
Strand 2	2	99	100	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	453	454	first strand
Strand 2	5	8	11	anti-parallel
Strand 3	5	39	42	anti-parallel
Strand 4	5	31	36	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	457	459	first strand
Strand 2	2	491	493	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	3	4	first strand
Strand 2	0	9	10	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	40	41	first strand
Strand 2	456	460	parallel
Strand 3	230	235	parallel
Strand 4	68	72	parallel
Strand 5	205	208	parallel
Strand 6	105	106	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	249	250	first strand
Strand 2	434	438	anti-parallel
Strand 3	417	421	anti-parallel
Strand 4	352	354	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	493	496	first strand
Strand 2	678	682	parallel
Strand 3	619	623	parallel
Strand 4	537	541	parallel
Strand 5	596	601	parallel
Strand 6	568	569	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	82	85	first strand
Strand 2	4	73	79	anti-parallel
Strand 3	4	26	30	parallel
Strand 4	4	175	181	parallel
Strand 5	4	210	215	parallel
Strand 6	4	235	238	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	295	296	first strand
Strand 2	4	287	288	anti-parallel
Strand 3	6	320	321	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	178	186	first strand
Strand 2	6	168	175	anti-parallel
Strand 3	6	124	128	parallel
Strand 4	6	229	233	parallel
Strand 5	6	260	262	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	347	348	first strand
Strand 2	6	355	356	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	390	391	first strand
Strand 2	6	427	428	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	132	135	first strand
Strand 2	7	140	143	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	383	385	first strand
Strand 2	7	512	514	parallel
Strand 3	7	484	488	parallel
Strand 4	7	407	410	parallel
Strand 5	7	453	455	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	652	654	first strand
Strand 2	7	606	608	parallel
Strand 3	7	669	672	parallel
Strand 4	7	703	707	parallel
Strand 5	7	552	555	parallel
Strand 6	7	732	734	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	558	559	first strand
Strand 2	7	709	710	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ML3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ML3