Analysis of interatomic Contacts of Structural Units in PDB entry:
7ML5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ML5 entry

There is 1 chain in PDB entry 7ML5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9ASP 694
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7ML5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
18 22Right-handed 310
Helix 3
AA3
A
23 45Right-handed alpha
Helix 4
AA4
A
47 52Right-handed alpha
Helix 5
AA5
A
53 57Right-handed 310
Helix 6
AA6
A
85 87Right-handed 310
Helix 7
AA7
A
89 93Right-handed 310
Helix 8
AA8
A
199 207Right-handed alpha
Helix 9
AA9
A
207 214Right-handed alpha
Helix 10
AB1
A
229 233Right-handed 310
Helix 11
AB2
A
245 248Right-handed 310
Helix 12
AB3
A
249 263Right-handed alpha
Helix 13
AB4
A
283 288Right-handed 310
Helix 14
AB5
A
292 296Right-handed 310
Helix 15
AB6
A
300 303Right-handed 310
Helix 16
AB7
A
318 337Right-handed alpha
Helix 17
AB8
A
345 351Right-handed alpha
Helix 18
AB9
A
363 367Right-handed 310
Helix 19
AC1
A
373 391Right-handed alpha
Helix 20
AC2
A
410 414Right-handed 310
Helix 21
AC3
A
425 437Right-handed alpha
Helix 22
AC4
A
438 442Right-handed 310
Helix 23
AC5
A
443 453Right-handed alpha
Helix 24
AC6
A
466 471Right-handed 310
Helix 25
AC7
A
476 483Right-handed alpha
Helix 26
AC8
A
484 489Right-handed alpha
Helix 27
AC9
A
497 519Right-handed alpha
Helix 28
AD1
A
527 531Right-handed 310
Helix 29
AD2
A
540 544Right-handed 310
Helix 30
AD3
A
553 559Right-handed alpha
Helix 31
AD4
A
563 582Right-handed alpha
Helix 32
AD5
A
583 586Right-handed 310
Helix 33
AD6
A
641 645Right-handed 310
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There are 8 sheets in PDB entry 7ML5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
102 108anti-parallel
Strand 4
A
96 97anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
122 127anti-parallel
Strand 3
A
133 136anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
155 157anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 461first strand
Strand 2
A
420 422parallel
Strand 3
A
395 398parallel
Strand 4
A
340 343parallel
Strand 5
A
266 271parallel
Strand 6
A
218 222parallel
Strand 7
A
182 187parallel
Strand 8
A
522 525parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
239 243anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
311 312anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 595first strand
Strand 2
A
600 605anti-parallel
Strand 3
A
608 613anti-parallel
Strand 4
A
686 692anti-parallel
Strand 5
A
632 638anti-parallel
Strand 6
A
656 657anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 627first strand
Strand 2
A
676 682anti-parallel
Strand 3
A
659 660anti-parallel
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