Analysis of interatomic Contacts of Structural Units in PDB entry:
7ML7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ML7 entry

There are 2 chains in PDB entry 7ML7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 1896
B	LEU 411	PRO 548

There are 48 helices in PDB entry 7ML7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	41	63	Right-handed alpha
Helix 4	AA4	A	68	90	Right-handed alpha
Helix 5	AA5	A	108	122	Right-handed alpha
Helix 6	AA6	A	137	155	Right-handed alpha
Helix 7	AA7	A	167	197	Right-handed alpha
Helix 8	AA8	A	201	213	Right-handed alpha
Helix 9	AA9	A	217	234	Right-handed alpha
Helix 10	AB1	A	243	248	Right-handed alpha
Helix 11	AB2	A	251	261	Right-handed alpha
Helix 12	AB3	A	264	280	Right-handed alpha
Helix 13	AB4	A	308	319	Right-handed alpha
Helix 14	AB5	A	319	324	Right-handed alpha
Helix 15	AB6	A	332	337	Right-handed alpha
Helix 16	AB7	A	339	351	Right-handed alpha
Helix 17	AB8	A	355	359	Right-handed 310
Helix 18	AB9	A	393	409	Right-handed alpha
Helix 19	AC1	A	413	420	Right-handed alpha
Helix 20	AC2	A	423	434	Right-handed alpha
Helix 21	AC3	A	443	450	Right-handed alpha
Helix 22	AC4	A	451	456	Right-handed 310
Helix 23	AC5	A	464	469	Right-handed alpha
Helix 24	AC6	A	470	483	Right-handed alpha
Helix 25	AC7	A	494	499	Right-handed alpha
Helix 26	AC8	A	500	502	Right-handed 310
Helix 27	AC9	A	512	519	Right-handed alpha
Helix 28	AD1	A	523	539	Right-handed alpha
Helix 29	AD2	A	558	567	Right-handed alpha
Helix 30	AD3	A	587	599	Right-handed alpha
Helix 31	AD4	A	637	641	Right-handed 310
Helix 32	AD5	A	667	682	Right-handed alpha
Helix 33	AD6	A	712	727	Right-handed alpha
Helix 34	AD7	A	764	774	Right-handed alpha
Helix 35	AD8	A	793	808	Right-handed alpha
Helix 36	AD9	A	814	833	Right-handed alpha
Helix 37	AE1	A	853	876	Right-handed alpha
Helix 38	AE2	A	1561	1572	Right-handed alpha
Helix 39	AE3	A	1582	1588	Right-handed alpha
Helix 40	AE4	A	1650	1652	Right-handed 310
Helix 41	AE5	A	1679	1682	Right-handed 310
Helix 42	AE6	A	1773	1779	Right-handed alpha
Helix 43	AE7	A	1792	1799	Right-handed alpha
Helix 44	AE8	A	1867	1871	Right-handed 310
Helix 45	AE9	B	422	426	Right-handed 310
Helix 46	AF1	B	464	466	Right-handed 310
Helix 47	AF2	B	495	501	Right-handed alpha
Helix 48	AF3	B	532	537	Right-handed alpha

There are 17 sheets in PDB entry 7ML7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	367	368	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	126	131	parallel
Strand 3	A	97	101	parallel
Strand 4	A	282	285	parallel
Strand 5	A	382	389	anti-parallel
Strand 6	A	374	377	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	508	509	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	629	first strand
Strand 2	A	618	621	anti-parallel
Strand 3	A	606	609	anti-parallel
Strand 4	A	580	583	parallel
Strand 5	A	649	651	parallel
Strand 6	A	690	696	parallel
Strand 7	A	645	646	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	629	first strand
Strand 2	A	618	621	anti-parallel
Strand 3	A	606	609	anti-parallel
Strand 4	A	580	583	parallel
Strand 5	A	649	651	parallel
Strand 6	A	690	696	parallel
Strand 7	A	735	738	parallel
Strand 8	A	777	781	anti-parallel
Strand 9	A	786	790	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	744	746	first strand
Strand 2	A	752	755	anti-parallel
Strand 3	A	761	762	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1531	1532	first strand
Strand 2	A	1537	1541	anti-parallel
Strand 3	A	1554	1557	anti-parallel
Strand 4	A	1611	1615	parallel
Strand 5	A	1620	1625	anti-parallel
Strand 6	A	1631	1637	anti-parallel
Strand 7	A	1643	1648	anti-parallel
Strand 8	A	1655	1659	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1673	1677	first strand
Strand 2	A	1701	1705	parallel
Strand 3	A	1729	1733	parallel
Strand 4	A	1780	1783	parallel
Strand 5	A	1790	1791	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1690	1693	first strand
Strand 2	A	1716	1719	parallel
Strand 3	A	1764	1767	parallel
Strand 4	A	1748	1753	anti-parallel
Strand 5	A	1740	1745	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1814	1818	first strand
Strand 2	A	1821	1825	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1834	1837	first strand
Strand 2	A	1842	1845	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1856	1858	first strand
Strand 2	A	1863	1865	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1877	1880	first strand
Strand 2	A	1885	1888	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	434	first strand
Strand 2	B	452	454	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	440	first strand
Strand 2	B	538	547	parallel
Strand 3	B	516	524	anti-parallel
Strand 4	B	468	469	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	440	first strand
Strand 2	B	538	547	parallel
Strand 3	B	516	524	anti-parallel
Strand 4	B	472	474	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	505	506	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ML7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ML7