Analysis of interatomic Contacts of Structural Units in PDB entry:
7MLV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MLV entry

There are 12 chains in PDB entry 7MLV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	ILE 2	THR 102
G	VAL 2	VAL 116
K	ILE 2	LYS 103
F	VAL 2	VAL 116
M	ILE 2	LEU 104
L	VAL 2	VAL 116
I	ILE 2	LEU 104
H	VAL 2	VAL 116
D	SER 9	MET 220
A	PRO 10	ILE 419
B	MET 8	ILE 419
C	SER 9	ILE 419

There are 35 helices in PDB entry 7MLV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	62	65	Right-handed 310
Helix 2	AA2	L	87	91	Right-handed 310
Helix 3	AA3	D	10	16	Right-handed 310
Helix 4	AA4	D	70	74	Right-handed 310
Helix 5	AA5	D	89	93	Right-handed 310
Helix 6	AA6	D	162	166	Right-handed 310
Helix 7	AA7	A	86	90	Right-handed 310
Helix 8	AA8	A	231	239	Right-handed alpha
Helix 9	AA9	A	248	253	Right-handed alpha
Helix 10	AB1	A	257	268	Right-handed alpha
Helix 11	AB2	A	268	273	Right-handed alpha
Helix 12	AB3	A	284	298	Right-handed alpha
Helix 13	AB4	A	299	302	Right-handed 310
Helix 14	AB5	A	396	401	Right-handed alpha
Helix 15	AB6	A	402	405	Right-handed 310
Helix 16	AB7	A	406	417	Right-handed alpha
Helix 17	AB8	B	11	18	Right-handed alpha
Helix 18	AB9	B	86	93	Right-handed 310
Helix 19	AC1	B	221	227	Right-handed alpha
Helix 20	AC2	B	227	238	Right-handed alpha
Helix 21	AC3	B	255	270	Right-handed alpha
Helix 22	AC4	B	281	282	Right-handed 310
Helix 23	AC5	B	284	284	Right-handed 310
Helix 24	AC6	B	285	293	Right-handed alpha
Helix 25	AC7	B	295	303	Right-handed alpha
Helix 26	AC8	B	403	417	Right-handed alpha
Helix 27	AC9	C	70	74	Right-handed 310
Helix 28	AD1	C	89	93	Right-handed 310
Helix 29	AD2	C	221	226	Right-handed alpha
Helix 30	AD3	C	227	237	Right-handed alpha
Helix 31	AD4	C	258	265	Right-handed alpha
Helix 32	AD5	C	265	270	Right-handed alpha
Helix 33	AD6	C	283	297	Right-handed alpha
Helix 34	AD7	C	398	406	Right-handed alpha
Helix 35	AD8	C	406	417	Right-handed alpha

There are 38 sheets in PDB entry 7MLV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	23	24	anti-parallel
Strand 3	J	70	71	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	45	49	anti-parallel
Strand 3	J	35	38	anti-parallel
Strand 4	J	85	87	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	62	63	first strand
Strand 2	J	74	75	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	23	24	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	21	first strand
Strand 2	G	78	82	anti-parallel
Strand 3	G	69	73	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	92	97	anti-parallel
Strand 5	G	112	114	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	37	first strand
Strand 2	K	45	46	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	67	first strand
Strand 2	K	70	72	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	22	25	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	112	115	parallel
Strand 3	F	92	97	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	49	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	20	first strand
Strand 2	F	78	82	anti-parallel
Strand 3	F	69	73	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	6	first strand
Strand 2	M	23	25	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	45	49	anti-parallel
Strand 3	M	33	37	anti-parallel
Strand 4	M	87	90	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	62	67	first strand
Strand 2	M	70	75	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	6	first strand
Strand 2	L	22	25	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	51	first strand
Strand 2	L	34	39	anti-parallel
Strand 3	L	92	97	anti-parallel
Strand 4	L	112	114	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	68	73	first strand
Strand 2	L	78	83	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	46	first strand
Strand 2	I	36	38	anti-parallel
Strand 3	I	85	87	anti-parallel
Strand 4	I	102	103	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	49	first strand
Strand 2	I	53	54	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	66	first strand
Strand 2	I	71	74	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	22	25	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	20	first strand
Strand 2	H	78	82	anti-parallel
Strand 3	H	69	73	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	49	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	92	97	anti-parallel
Strand 5	H	112	114	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	168	170	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	68	first strand
Strand 2	D	126	133	anti-parallel
Strand 3	D	116	120	anti-parallel
Strand 4	D	83	84	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	196	first strand
Strand 2	D	211	212	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	166	167	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	69	first strand
Strand 2	A	125	134	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	155	158	anti-parallel
Strand 3	A	205	211	anti-parallel
Strand 4	A	199	202	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	214	216	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	166	167	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	137	first strand
Strand 2	B	57	69	anti-parallel
Strand 3	B	40	45	anti-parallel
Strand 4	B	176	177	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	118	120	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	211	217	anti-parallel
Strand 3	B	188	189	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	59	67	anti-parallel
Strand 3	C	37	49	anti-parallel
Strand 4	C	166	170	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	156	158	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	214	217	anti-parallel
Strand 3	C	188	189	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	201	first strand
Strand 2	C	206	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MLV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MLV