Analysis of interatomic Contacts of Structural Units in PDB entry:
7MMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MMQ entry

There are 8 chains in PDB entry 7MMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 4	PHE 337
B	ASN 4	PHE 337
C	ASN 4	PHE 337
D	ASN 4	PHE 337
E	LYS 2	ALA 140
G	LYS 2	ASN 139
F	GLU 3	ASN 139
H	GLU 3	ALA 140

There are 99 helices in PDB entry 7MMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	9	Right-handed 310
Helix 2	AA2	A	11	18	Right-handed alpha
Helix 3	AA3	A	34	47	Right-handed alpha
Helix 4	AA4	A	50	54	Right-handed 310
Helix 5	AA5	A	55	58	Right-handed 310
Helix 6	AA6	A	59	66	Right-handed alpha
Helix 7	AA7	A	67	91	Right-handed alpha
Helix 8	AA8	A	91	97	Right-handed alpha
Helix 9	AA9	A	98	100	Right-handed 310
Helix 10	AB1	A	102	131	Right-handed alpha
Helix 11	AB2	A	132	146	Right-handed alpha
Helix 12	AB3	A	146	162	Right-handed alpha
Helix 13	AB4	A	164	178	Right-handed alpha
Helix 14	AB5	A	180	192	Right-handed alpha
Helix 15	AB6	A	196	226	Right-handed alpha
Helix 16	AB7	A	229	259	Right-handed alpha
Helix 17	AB8	A	264	283	Right-handed alpha
Helix 18	AB9	A	290	295	Right-handed alpha
Helix 19	AC1	A	297	305	Right-handed alpha
Helix 20	AC2	B	4	9	Right-handed 310
Helix 21	AC3	B	11	18	Right-handed alpha
Helix 22	AC4	B	34	47	Right-handed alpha
Helix 23	AC5	B	50	54	Right-handed 310
Helix 24	AC6	B	55	58	Right-handed 310
Helix 25	AC7	B	59	65	Right-handed alpha
Helix 26	AC8	B	67	91	Right-handed alpha
Helix 27	AC9	B	91	97	Right-handed alpha
Helix 28	AD1	B	98	100	Right-handed 310
Helix 29	AD2	B	102	131	Right-handed alpha
Helix 30	AD3	B	132	146	Right-handed alpha
Helix 31	AD4	B	146	162	Right-handed alpha
Helix 32	AD5	B	164	178	Right-handed alpha
Helix 33	AD6	B	180	192	Right-handed alpha
Helix 34	AD7	B	196	226	Right-handed alpha
Helix 35	AD8	B	229	259	Right-handed alpha
Helix 36	AD9	B	264	283	Right-handed alpha
Helix 37	AE1	B	291	295	Right-handed 310
Helix 38	AE2	B	297	305	Right-handed alpha
Helix 39	AE3	C	4	7	Right-handed 310
Helix 40	AE4	C	11	18	Right-handed alpha
Helix 41	AE5	C	34	47	Right-handed alpha
Helix 42	AE6	C	50	54	Right-handed 310
Helix 43	AE7	C	56	58	Right-handed 310
Helix 44	AE8	C	59	66	Right-handed alpha
Helix 45	AE9	C	67	91	Right-handed alpha
Helix 46	AF1	C	93	100	Right-handed 310
Helix 47	AF2	C	102	131	Right-handed alpha
Helix 48	AF3	C	132	146	Right-handed alpha
Helix 49	AF4	C	146	162	Right-handed alpha
Helix 50	AF5	C	164	178	Right-handed alpha
Helix 51	AF6	C	180	193	Right-handed alpha
Helix 52	AF7	C	196	226	Right-handed alpha
Helix 53	AF8	C	229	259	Right-handed alpha
Helix 54	AF9	C	264	283	Right-handed alpha
Helix 55	AG1	C	297	305	Right-handed alpha
Helix 56	AG2	D	4	9	Right-handed 310
Helix 57	AG3	D	11	18	Right-handed alpha
Helix 58	AG4	D	34	47	Right-handed alpha
Helix 59	AG5	D	50	54	Right-handed 310
Helix 60	AG6	D	55	58	Right-handed 310
Helix 61	AG7	D	59	66	Right-handed alpha
Helix 62	AG8	D	67	91	Right-handed alpha
Helix 63	AG9	D	91	97	Right-handed alpha
Helix 64	AH1	D	98	100	Right-handed 310
Helix 65	AH2	D	102	131	Right-handed alpha
Helix 66	AH3	D	132	146	Right-handed alpha
Helix 67	AH4	D	146	162	Right-handed alpha
Helix 68	AH5	D	164	178	Right-handed alpha
Helix 69	AH6	D	180	192	Right-handed alpha
Helix 70	AH7	D	196	226	Right-handed alpha
Helix 71	AH8	D	229	259	Right-handed alpha
Helix 72	AH9	D	264	283	Right-handed alpha
Helix 73	AI1	D	291	295	Right-handed 310
Helix 74	AI2	D	297	305	Right-handed alpha
Helix 75	AI3	D	311	316	Right-handed alpha
Helix 76	AI4	E	13	21	Right-handed alpha
Helix 77	AI5	E	68	76	Right-handed alpha
Helix 78	AI6	E	77	82	Right-handed alpha
Helix 79	AI7	E	92	99	Right-handed 310
Helix 80	AI8	E	101	111	Right-handed alpha
Helix 81	AI9	E	123	140	Right-handed alpha
Helix 82	AJ1	G	13	20	Right-handed alpha
Helix 83	AJ2	G	68	77	Right-handed alpha
Helix 84	AJ3	G	77	82	Right-handed alpha
Helix 85	AJ4	G	92	99	Right-handed 310
Helix 86	AJ5	G	101	110	Right-handed alpha
Helix 87	AJ6	G	123	139	Right-handed alpha
Helix 88	AJ7	F	13	20	Right-handed alpha
Helix 89	AJ8	F	68	77	Right-handed alpha
Helix 90	AJ9	F	77	82	Right-handed alpha
Helix 91	AK1	F	92	99	Right-handed 310
Helix 92	AK2	F	101	111	Right-handed alpha
Helix 93	AK3	F	123	139	Right-handed alpha
Helix 94	AK4	H	13	22	Right-handed alpha
Helix 95	AK5	H	68	77	Right-handed alpha
Helix 96	AK6	H	77	82	Right-handed alpha
Helix 97	AK7	H	92	99	Right-handed 310
Helix 98	AK8	H	101	111	Right-handed alpha
Helix 99	AK9	H	123	140	Right-handed alpha

There are 5 sheets in PDB entry 7MMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	10	first strand
Strand 2	C	23	24	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	28	first strand
Strand 2	E	4	7	parallel
Strand 3	E	43	47	parallel
Strand 4	E	84	91	parallel
Strand 5	E	114	119	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	28	first strand
Strand 2	G	4	7	parallel
Strand 3	G	43	48	parallel
Strand 4	G	84	91	parallel
Strand 5	G	114	119	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	28	first strand
Strand 2	F	4	7	parallel
Strand 3	F	43	47	parallel
Strand 4	F	84	91	parallel
Strand 5	F	114	119	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	28	first strand
Strand 2	H	4	7	parallel
Strand 3	H	43	47	parallel
Strand 4	H	84	89	parallel
Strand 5	H	114	117	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MMQ