Analysis of interatomic Contacts of Structural Units in PDB entry:
7MNI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MNI entry

There are 3 chains in PDB entry 7MNI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 13	PRO 493
B	MET 714	PHE 863
C	GLU 12	GLN 99

There are 23 helices in PDB entry 7MNI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed alpha
Helix 2	AA2	A	21	33	Right-handed alpha
Helix 3	AA3	A	148	150	Right-handed 310
Helix 4	AA4	A	161	168	Right-handed alpha
Helix 5	AA5	A	252	255	Right-handed 310
Helix 6	AA6	A	420	424	Right-handed 310
Helix 7	AA7	A	431	443	Right-handed alpha
Helix 8	AA8	B	729	737	Right-handed alpha
Helix 9	AA9	B	770	774	Right-handed alpha
Helix 10	AB1	B	822	829	Right-handed alpha
Helix 11	AB2	B	830	841	Right-handed alpha
Helix 12	AB3	C	13	18	Right-handed alpha
Helix 13	AB4	C	21	32	Right-handed alpha
Helix 14	AB5	C	148	150	Right-handed 310
Helix 15	AB6	C	161	167	Right-handed alpha
Helix 16	AB7	C	252	255	Right-handed 310
Helix 17	AB8	C	419	424	Right-handed 310
Helix 18	AB9	C	431	445	Right-handed alpha
Helix 19	AC1	D	729	741	Right-handed alpha
Helix 20	AC2	D	770	774	Right-handed alpha
Helix 21	AC3	D	787	791	Right-handed 310
Helix 22	AC4	D	822	829	Right-handed alpha
Helix 23	AC5	D	830	842	Right-handed alpha

There are 22 sheets in PDB entry 7MNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	99	103	anti-parallel
Strand 5	A	152	155	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	122	126	anti-parallel
Strand 3	A	131	135	anti-parallel
Strand 4	A	157	160	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	145	146	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	178	first strand
Strand 2	A	187	192	anti-parallel
Strand 3	A	196	201	anti-parallel
Strand 4	A	210	213	anti-parallel
Strand 5	A	289	290	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	B	781	784	anti-parallel
Strand 3	B	775	778	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	243	first strand
Strand 2	A	261	271	anti-parallel
Strand 3	A	247	250	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	243	first strand
Strand 2	A	261	271	anti-parallel
Strand 3	A	276	281	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	362	370	parallel
Strand 3	A	332	339	anti-parallel
Strand 4	A	323	328	anti-parallel
Strand 5	A	311	317	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	404	409	anti-parallel
Strand 3	A	412	417	anti-parallel
Strand 4	A	448	454	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	472	first strand
Strand 2	A	479	483	anti-parallel
Strand 3	A	489	492	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	724	727	first strand
Strand 2	B	744	752	anti-parallel
Strand 3	B	756	765	anti-parallel
Strand 4	B	802	806	anti-parallel
Strand 5	B	855	860	anti-parallel
Strand 6	B	844	850	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	67	72	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	99	103	anti-parallel
Strand 5	C	152	155	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	122	126	anti-parallel
Strand 3	C	131	135	anti-parallel
Strand 4	C	157	160	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	145	146	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	178	first strand
Strand 2	C	187	192	anti-parallel
Strand 3	C	196	201	anti-parallel
Strand 4	C	210	213	anti-parallel
Strand 5	C	289	290	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	D	781	784	anti-parallel
Strand 3	D	775	778	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	243	first strand
Strand 2	C	261	271	anti-parallel
Strand 3	C	247	250	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	243	first strand
Strand 2	C	261	271	anti-parallel
Strand 3	C	276	281	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	300	first strand
Strand 2	C	362	370	parallel
Strand 3	C	332	339	anti-parallel
Strand 4	C	323	328	anti-parallel
Strand 5	C	311	317	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	397	first strand
Strand 2	C	404	409	anti-parallel
Strand 3	C	412	417	anti-parallel
Strand 4	C	448	454	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	468	472	first strand
Strand 2	C	479	483	anti-parallel
Strand 3	C	489	492	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	724	727	first strand
Strand 2	D	744	752	anti-parallel
Strand 3	D	756	765	anti-parallel
Strand 4	D	802	806	anti-parallel
Strand 5	D	855	860	anti-parallel
Strand 6	D	845	850	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MNI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MNI