Analysis of interatomic Contacts of Structural Units in PDB entry:
7MNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MNR entry

There are 2 chains in PDB entry 7MNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ALA 208
B
 GLY 1468LYS 1507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7MNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 28Right-handed alpha
Helix 2
AA2
A
30 36Right-handed alpha
Helix 3
AA3
A
68 73Right-handed 310
Helix 4
AA4
A
76 81Right-handed alpha
Helix 5
AA5
A
94 100Right-handed alpha
Helix 6
AA6
A
100 113Right-handed alpha
Helix 7
AA7
A
132 139Right-handed alpha
Helix 8
AA8
A
150 154Right-handed 310
Helix 9
AA9
A
158 170Right-handed alpha
Helix 10
AB1
A
190 207Right-handed alpha
Helix 11
AB2
B
1471 1476Right-handed alpha
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There are 3 sheets in PDB entry 7MNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
45 54anti-parallel
Strand 3
A
57 66anti-parallel
Strand 4
A
9 17parallel
Strand 5
A
85 91parallel
Strand 6
A
117 122parallel
Strand 7
A
144 148parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
45 54anti-parallel
Strand 3
A
176 178anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1483 1484first strand
Strand 2
B
1491 1492anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il