Analysis of interatomic Contacts of Structural Units in PDB entry:
7MPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MPE entry

There is 1 chain in PDB entry 7MPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12VAL 1512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 7MPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 34Right-handed alpha
Helix 2
AA2
A
36 57Right-handed alpha
Helix 3
AA3
A
69 96Right-handed alpha
Helix 4
AA4
A
100 128Right-handed alpha
Helix 5
AA5
A
133 161Right-handed alpha
Helix 6
AA6
A
168 189Right-handed alpha
Helix 7
AA7
A
216 223Right-handed alpha
Helix 8
AA8
A
224 227Right-handed 310
Helix 9
AA9
A
228 236Right-handed alpha
Helix 10
AB1
A
239 243Right-handed 310
Helix 11
AB2
A
251 269Right-handed alpha
Helix 12
AB3
A
274 284Right-handed alpha
Helix 13
AB4
A
284 302Right-handed alpha
Helix 14
AB5
A
303 323Right-handed alpha
Helix 15
AB6
A
342 350Right-handed alpha
Helix 16
AB7
A
350 379Right-handed alpha
Helix 17
AB8
A
381 392Right-handed alpha
Helix 18
AB9
A
393 400Right-handed alpha
Helix 19
AC1
A
402 411Right-handed alpha
Helix 20
AC2
A
419 427Right-handed 310
Helix 21
AC3
A
433 445Right-handed alpha
Helix 22
AC4
A
448 458Right-handed alpha
Helix 23
AC5
A
458 493Right-handed alpha
Helix 24
AC6
A
493 500Right-handed alpha
Helix 25
AC7
A
503 518Right-handed alpha
Helix 26
AC8
A
519 521Right-handed 310
Helix 27
AC9
A
522 554Right-handed alpha
Helix 28
AD1
A
560 580Right-handed alpha
Helix 29
AD2
A
580 602Right-handed alpha
Helix 30
AD3
A
668 677Right-handed alpha
Helix 31
AD4
A
707 713Right-handed alpha
Helix 32
AD5
A
718 729Right-handed alpha
Helix 33
AD6
A
731 738Right-handed alpha
Helix 34
AD7
A
740 743Right-handed 310
Helix 35
AD8
A
754 770Right-handed alpha
Helix 36
AD9
A
779 783Right-handed 310
Helix 37
AE1
A
784 795Right-handed alpha
Helix 38
AE2
A
814 820Right-handed alpha
Helix 39
AE3
A
836 842Right-handed alpha
Helix 40
AE4
A
936 945Right-handed alpha
Helix 41
AE5
A
947 982Right-handed alpha
Helix 42
AE6
A
987 1016Right-handed alpha
Helix 43
AE7
A
1018 1034Right-handed alpha
Helix 44
AE8
A
1037 1044Right-handed alpha
Helix 45
AE9
A
1045 1050Right-handed alpha
Helix 46
AF1
A
1050 1055Right-handed alpha
Helix 47
AF2
A
1057 1063Right-handed alpha
Helix 48
AF3
A
1064 1073Right-handed alpha
Helix 49
AF4
A
1073 1089Right-handed alpha
Helix 50
AF5
A
1092 1126Right-handed alpha
Helix 51
AF6
A
1128 1138Right-handed alpha
Helix 52
AF7
A
1147 1184Right-handed alpha
Helix 53
AF8
A
1185 1201Right-handed alpha
Helix 54
AF9
A
1205 1217Right-handed alpha
Helix 55
AG1
A
1218 1220Right-handed 310
Helix 56
AG2
A
1221 1247Right-handed alpha
Helix 57
AG3
A
1341 1346Right-handed alpha
Helix 58
AG4
A
1347 1349Right-handed 310
Helix 59
AG5
A
1363 1367Right-handed alpha
Helix 60
AG6
A
1374 1385Right-handed alpha
Helix 61
AG7
A
1388 1395Right-handed alpha
Helix 62
AG8
A
1413 1426Right-handed alpha
Helix 63
AG9
A
1441 1456Right-handed alpha
Helix 64
AH1
A
1467 1472Right-handed alpha
Helix 65
AH2
A
1490 1496Right-handed alpha
Helix 66
AH3
A
1500 1510Right-handed alpha
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There are 7 sheets in PDB entry 7MPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 615first strand
Strand 2
A
688 690parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 654first strand
Strand 2
A
625 635anti-parallel
Strand 3
A
681 682anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
693 696first strand
Strand 2
A
773 777parallel
Strand 3
A
806 810parallel
Strand 4
A
658 662parallel
Strand 5
A
823 827parallel
Strand 6
A
830 835anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 706first strand
Strand 2
A
745 746anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1287 1292first strand
Strand 2
A
1272 1280anti-parallel
Strand 3
A
1327 1332anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1350 1352first strand
Strand 2
A
1430 1433parallel
Strand 3
A
1460 1463parallel
Strand 4
A
1301 1305parallel
Strand 5
A
1477 1481parallel
Strand 6
A
1484 1485anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1361 1362first strand
Strand 2
A
1402 1403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il