Analysis of interatomic Contacts of Structural Units in PDB entry:
7MPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MPY entry

There are 2 chains in PDB entry 7MPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10ARG 479
B
 PHE 11ARG 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7MPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 39Right-handed alpha
Helix 2
AA2
A
75 91Right-handed alpha
Helix 3
AA3
A
125 130Right-handed 310
Helix 4
AA4
A
131 140Right-handed alpha
Helix 5
AA5
A
152 159Right-handed alpha
Helix 6
AA6
A
164 174Right-handed alpha
Helix 7
AA7
A
175 179Right-handed 310
Helix 8
AA8
A
224 237Right-handed alpha
Helix 9
AA9
A
257 275Right-handed alpha
Helix 10
AB1
A
276 279Right-handed 310
Helix 11
AB2
A
289 299Right-handed alpha
Helix 12
AB3
A
314 323Right-handed alpha
Helix 13
AB4
A
350 368Right-handed alpha
Helix 14
AB5
A
371 373Right-handed 310
Helix 15
AB6
A
386 396Right-handed alpha
Helix 16
AB7
A
396 408Right-handed alpha
Helix 17
AB8
A
408 413Right-handed alpha
Helix 18
AB9
A
423 431Right-handed alpha
Helix 19
AC1
A
434 437Right-handed 310
Helix 20
AC2
A
438 452Right-handed alpha
Helix 21
AC3
A
461 476Right-handed alpha
Helix 22
AC4
B
24 39Right-handed alpha
Helix 23
AC5
B
75 91Right-handed alpha
Helix 24
AC6
B
125 130Right-handed 310
Helix 25
AC7
B
131 141Right-handed alpha
Helix 26
AC8
B
152 159Right-handed alpha
Helix 27
AC9
B
164 174Right-handed alpha
Helix 28
AD1
B
175 179Right-handed 310
Helix 29
AD2
B
223 238Right-handed alpha
Helix 30
AD3
B
261 275Right-handed alpha
Helix 31
AD4
B
276 279Right-handed 310
Helix 32
AD5
B
289 299Right-handed alpha
Helix 33
AD6
B
316 323Right-handed alpha
Helix 34
AD7
B
349 368Right-handed alpha
Helix 35
AD8
B
371 373Right-handed 310
Helix 36
AD9
B
386 396Right-handed alpha
Helix 37
AE1
B
396 408Right-handed alpha
Helix 38
AE2
B
408 413Right-handed alpha
Helix 39
AE3
B
423 431Right-handed alpha
Helix 40
AE4
B
434 437Right-handed 310
Helix 41
AE5
B
438 452Right-handed alpha
Helix 42
AE6
B
461 477Right-handed alpha
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There are 8 sheets in PDB entry 7MPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
63 72anti-parallel
Strand 3
A
12 20anti-parallel
Strand 4
A
104 111anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
63 72anti-parallel
Strand 3
A
49 52anti-parallel
Strand 4
A
185 191anti-parallel
Strand 5
A
194 196anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 378first strand
Strand 2
A
327 330parallel
Strand 3
A
303 306parallel
Strand 4
A
282 286parallel
Strand 5
A
241 245parallel
Strand 6
A
203 209parallel
Strand 7
A
456 459parallel
Strand 8
A
417 418parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 46first strand
Strand 2
B
63 72anti-parallel
Strand 3
B
12 20anti-parallel
Strand 4
B
105 111anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 46first strand
Strand 2
B
63 72anti-parallel
Strand 3
B
49 52anti-parallel
Strand 4
B
185 191anti-parallel
Strand 5
B
194 196anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
122 123anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 285first strand
Strand 2
B
241 245parallel
Strand 3
B
203 209parallel
Strand 4
B
456 459parallel
Strand 5
B
417 418parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 330first strand
Strand 2
B
375 378parallel
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