Analysis of interatomic Contacts of Structural Units in PDB entry:
7MQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MQV entry

There are 4 chains in PDB entry 7MQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4VAL 297
B
 ARG 14LYS 299
C
 SER 7ARG 298
D
 MET 13ARG 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 7MQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
23 37Right-handed alpha
Helix 3
AA3
A
47 57Right-handed alpha
Helix 4
AA4
A
66 74Right-handed alpha
Helix 5
AA5
A
82 96Right-handed alpha
Helix 6
AA6
A
111 123Right-handed alpha
Helix 7
AA7
A
141 145Right-handed 310
Helix 8
AA8
A
164 175Right-handed alpha
Helix 9
AA9
A
176 179Right-handed 310
Helix 10
AB1
A
186 198Right-handed alpha
Helix 11
AB2
A
198 217Right-handed alpha
Helix 12
AB3
A
219 226Right-handed alpha
Helix 13
AB4
A
227 235Right-handed alpha
Helix 14
AB5
A
236 239Right-handed 310
Helix 15
AB6
A
240 251Right-handed alpha
Helix 16
AB7
A
251 276Right-handed alpha
Helix 17
AB8
A
277 295Right-handed alpha
Helix 18
AB9
B
23 37Right-handed alpha
Helix 19
AC1
B
47 57Right-handed alpha
Helix 20
AC2
B
66 73Right-handed alpha
Helix 21
AC3
B
82 96Right-handed alpha
Helix 22
AC4
B
111 123Right-handed alpha
Helix 23
AC5
B
141 145Right-handed 310
Helix 24
AC6
B
164 175Right-handed alpha
Helix 25
AC7
B
176 179Right-handed 310
Helix 26
AC8
B
186 198Right-handed alpha
Helix 27
AC9
B
198 217Right-handed alpha
Helix 28
AD1
B
219 226Right-handed alpha
Helix 29
AD2
B
228 234Right-handed alpha
Helix 30
AD3
B
235 239Right-handed 310
Helix 31
AD4
B
240 251Right-handed alpha
Helix 32
AD5
B
251 276Right-handed alpha
Helix 33
AD6
B
277 295Right-handed alpha
Helix 34
AD7
C
23 37Right-handed alpha
Helix 35
AD8
C
47 57Right-handed alpha
Helix 36
AD9
C
66 74Right-handed alpha
Helix 37
AE1
C
82 96Right-handed alpha
Helix 38
AE2
C
111 123Right-handed alpha
Helix 39
AE3
C
141 145Right-handed 310
Helix 40
AE4
C
164 175Right-handed alpha
Helix 41
AE5
C
176 179Right-handed 310
Helix 42
AE6
C
186 198Right-handed alpha
Helix 43
AE7
C
198 217Right-handed alpha
Helix 44
AE8
C
220 227Right-handed alpha
Helix 45
AE9
C
228 234Right-handed alpha
Helix 46
AF1
C
235 239Right-handed 310
Helix 47
AF2
C
240 251Right-handed alpha
Helix 48
AF3
C
251 276Right-handed alpha
Helix 49
AF4
C
277 295Right-handed alpha
Helix 50
AF5
D
23 37Right-handed alpha
Helix 51
AF6
D
47 57Right-handed alpha
Helix 52
AF7
D
66 73Right-handed alpha
Helix 53
AF8
D
82 96Right-handed alpha
Helix 54
AF9
D
111 123Right-handed alpha
Helix 55
AG1
D
141 145Right-handed 310
Helix 56
AG2
D
164 175Right-handed alpha
Helix 57
AG3
D
176 179Right-handed 310
Helix 58
AG4
D
186 198Right-handed alpha
Helix 59
AG5
D
198 217Right-handed alpha
Helix 60
AG6
D
219 226Right-handed alpha
Helix 61
AG7
D
227 235Right-handed alpha
Helix 62
AG8
D
236 239Right-handed 310
Helix 63
AG9
D
240 251Right-handed alpha
Helix 64
AH1
D
251 276Right-handed alpha
Helix 65
AH2
D
277 295Right-handed alpha
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There are 4 sheets in PDB entry 7MQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
40 44parallel
Strand 3
A
16 20parallel
Strand 4
A
76 79parallel
Strand 5
A
103 106parallel
Strand 6
A
127 133parallel
Strand 7
A
154 159anti-parallel
Strand 8
A
181 184parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
39 44parallel
Strand 3
B
15 20parallel
Strand 4
B
76 79parallel
Strand 5
B
103 106parallel
Strand 6
B
127 133parallel
Strand 7
B
154 159anti-parallel
Strand 8
B
181 184parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
39 44parallel
Strand 3
C
15 20parallel
Strand 4
C
76 79parallel
Strand 5
C
103 106parallel
Strand 6
C
127 133parallel
Strand 7
C
154 159anti-parallel
Strand 8
C
181 184parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 63first strand
Strand 2
D
39 44parallel
Strand 3
D
15 20parallel
Strand 4
D
76 79parallel
Strand 5
D
103 106parallel
Strand 6
D
127 133parallel
Strand 7
D
154 159anti-parallel
Strand 8
D
181 184parallel
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