Analysis of interatomic Contacts of Structural Units in PDB entry:
7MS2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MS2 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 7MS2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 734
A
 GLN 736LYS 750
B
 VAL 3VAL 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 7MS2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
13 21Right-handed alpha
Helix 3
AA3
A
32 36Right-handed 310
Helix 4
AA4
A
72 77Right-handed alpha
Helix 5
AA5
A
78 80Right-handed 310
Helix 6
AA6
A
81 99Right-handed alpha
Helix 7
AA7
A
119 123Right-handed 310
Helix 8
AA8
A
127 145Right-handed alpha
Helix 9
AA9
A
171 178Right-handed alpha
Helix 10
AB1
A
178 191Right-handed alpha
Helix 11
AB2
A
210 215Right-handed alpha
Helix 12
AB3
A
237 245Right-handed alpha
Helix 13
AB4
A
255 267Right-handed alpha
Helix 14
AB5
A
271 292Right-handed alpha
Helix 15
AB6
A
300 314Right-handed alpha
Helix 16
AB7
A
323 325Right-handed 310
Helix 17
AB8
A
338 343Right-handed alpha
Helix 18
AB9
A
361 371Right-handed alpha
Helix 19
AC1
A
390 404Right-handed alpha
Helix 20
AC2
A
414 418Right-handed 310
Helix 21
AC3
A
430 444Right-handed alpha
Helix 22
AC4
A
461 465Right-handed 310
Helix 23
AC5
A
477 487Right-handed alpha
Helix 24
AC6
A
503 507Right-handed 310
Helix 25
AC7
A
509 513Right-handed 310
Helix 26
AC8
A
529 537Right-handed alpha
Helix 27
AC9
A
683 688Right-handed alpha
Helix 28
AD1
A
690 708Right-handed alpha
Helix 29
AD2
A
717 726Right-handed alpha
Helix 30
AD3
A
727 736Right-handed alpha
Helix 31
AD4
A
737 750Right-handed alpha
Helix 32
AD5
B
4 12Right-handed alpha
Helix 33
AD6
B
13 21Right-handed alpha
Helix 34
AD7
B
32 36Right-handed 310
Helix 35
AD8
B
72 77Right-handed alpha
Helix 36
AD9
B
78 80Right-handed 310
Helix 37
AE1
B
81 99Right-handed alpha
Helix 38
AE2
B
117 123Right-handed 310
Helix 39
AE3
B
127 145Right-handed alpha
Helix 40
AE4
B
171 178Right-handed alpha
Helix 41
AE5
B
178 191Right-handed alpha
Helix 42
AE6
B
210 215Right-handed alpha
Helix 43
AE7
B
237 245Right-handed alpha
Helix 44
AE8
B
255 267Right-handed alpha
Helix 45
AE9
B
271 292Right-handed alpha
Helix 46
AF1
B
300 314Right-handed alpha
Helix 47
AF2
B
323 325Right-handed 310
Helix 48
AF3
B
339 342Right-handed 310
Helix 49
AF4
B
361 371Right-handed alpha
Helix 50
AF5
B
391 404Right-handed alpha
Helix 51
AF6
B
414 418Right-handed 310
Helix 52
AF7
B
430 444Right-handed alpha
Helix 53
AF8
B
461 465Right-handed 310
Helix 54
AF9
B
477 487Right-handed alpha
Helix 55
AG1
B
503 507Right-handed 310
Helix 56
AG2
B
509 513Right-handed 310
Helix 57
AG3
B
529 537Right-handed alpha
Helix 58
AG4
B
683 688Right-handed alpha
Helix 59
AG5
B
690 708Right-handed alpha
Helix 60
AG6
B
717 726Right-handed alpha
Helix 61
AG7
B
727 734Right-handed alpha
Helix 62
AG8
B
737 750Right-handed alpha
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There are 12 sheets in PDB entry 7MS2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
103 104parallel
Strand 3
A
148 154parallel
Strand 4
A
194 197parallel
Strand 5
A
227 229parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
201 202anti-parallel
Strand 3
A
167 169parallel
Strand 4
A
519 521parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
467 470anti-parallel
Strand 3
A
447 452parallel
Strand 4
A
406 412parallel
Strand 5
A
333 337parallel
Strand 6
A
375 379parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 560first strand
Strand 2
A
571 579anti-parallel
Strand 3
A
620 627anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 565first strand
Strand 2
A
660 668parallel
Strand 3
A
647 654anti-parallel
Strand 4
A
585 595anti-parallel
Strand 5
A
606 615anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 636first strand
Strand 2
A
641 643anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
103 104parallel
Strand 3
B
148 154parallel
Strand 4
B
194 197parallel
Strand 5
B
227 229parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 206first strand
Strand 2
B
201 202anti-parallel
Strand 3
B
167 169parallel
Strand 4
B
519 521parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 321first strand
Strand 2
B
467 472anti-parallel
Strand 3
B
447 452parallel
Strand 4
B
406 412parallel
Strand 5
B
333 337parallel
Strand 6
B
375 379parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
553 560first strand
Strand 2
B
571 579anti-parallel
Strand 3
B
620 627anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 565first strand
Strand 2
B
660 668parallel
Strand 3
B
647 654anti-parallel
Strand 4
B
585 595anti-parallel
Strand 5
B
606 615anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
634 636first strand
Strand 2
B
641 643anti-parallel
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