Analysis of interatomic Contacts of Structural Units in PDB entry:
7MS9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MS9 entry

There are 12 chains in PDB entry 7MS9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	GLU 121
B	PRO 1	GLU 121
C	PRO 1	GLU 121
D	PRO 1	GLU 121
E	PRO 1	GLU 121
F	PRO 1	GLU 121
G	PRO 1	GLU 121
H	PRO 1	GLU 121
I	PRO 1	GLU 121
J	PRO 1	GLU 121
K	PRO 1	GLU 121
L	PRO 1	GLU 121

There are 72 helices in PDB entry 7MS9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	32	Right-handed alpha
Helix 2	AA2	A	35	38	Right-handed 310
Helix 3	AA3	A	47	49	Right-handed 310
Helix 4	AA4	A	74	94	Right-handed alpha
Helix 5	AA5	A	96	98	Right-handed 310
Helix 6	AA6	A	108	110	Right-handed 310
Helix 7	AA7	B	13	32	Right-handed alpha
Helix 8	AA8	B	35	38	Right-handed 310
Helix 9	AA9	B	47	49	Right-handed 310
Helix 10	AB1	B	74	94	Right-handed alpha
Helix 11	AB2	B	96	98	Right-handed 310
Helix 12	AB3	B	108	110	Right-handed 310
Helix 13	AB4	C	13	33	Right-handed alpha
Helix 14	AB5	C	35	38	Right-handed 310
Helix 15	AB6	C	47	49	Right-handed 310
Helix 16	AB7	C	74	94	Right-handed alpha
Helix 17	AB8	C	96	98	Right-handed 310
Helix 18	AB9	C	108	110	Right-handed 310
Helix 19	AC1	D	13	33	Right-handed alpha
Helix 20	AC2	D	35	38	Right-handed 310
Helix 21	AC3	D	47	49	Right-handed 310
Helix 22	AC4	D	74	94	Right-handed alpha
Helix 23	AC5	D	96	98	Right-handed 310
Helix 24	AC6	D	108	110	Right-handed 310
Helix 25	AC7	E	13	32	Right-handed alpha
Helix 26	AC8	E	35	38	Right-handed 310
Helix 27	AC9	E	47	49	Right-handed 310
Helix 28	AD1	E	74	94	Right-handed alpha
Helix 29	AD2	E	96	98	Right-handed 310
Helix 30	AD3	E	108	110	Right-handed 310
Helix 31	AD4	F	13	32	Right-handed alpha
Helix 32	AD5	F	35	38	Right-handed 310
Helix 33	AD6	F	47	49	Right-handed 310
Helix 34	AD7	F	74	94	Right-handed alpha
Helix 35	AD8	F	96	98	Right-handed 310
Helix 36	AD9	F	108	110	Right-handed 310
Helix 37	AE1	G	13	32	Right-handed alpha
Helix 38	AE2	G	35	38	Right-handed 310
Helix 39	AE3	G	47	49	Right-handed 310
Helix 40	AE4	G	74	94	Right-handed alpha
Helix 41	AE5	G	96	98	Right-handed 310
Helix 42	AE6	G	108	110	Right-handed 310
Helix 43	AE7	H	13	32	Right-handed alpha
Helix 44	AE8	H	35	38	Right-handed 310
Helix 45	AE9	H	47	49	Right-handed 310
Helix 46	AF1	H	74	94	Right-handed alpha
Helix 47	AF2	H	96	98	Right-handed 310
Helix 48	AF3	H	108	110	Right-handed 310
Helix 49	AF4	I	13	33	Right-handed alpha
Helix 50	AF5	I	35	38	Right-handed 310
Helix 51	AF6	I	47	49	Right-handed 310
Helix 52	AF7	I	74	94	Right-handed alpha
Helix 53	AF8	I	96	98	Right-handed 310
Helix 54	AF9	I	108	110	Right-handed 310
Helix 55	AG1	J	13	32	Right-handed alpha
Helix 56	AG2	J	35	38	Right-handed 310
Helix 57	AG3	J	47	49	Right-handed 310
Helix 58	AG4	J	74	94	Right-handed alpha
Helix 59	AG5	J	96	98	Right-handed 310
Helix 60	AG6	J	108	110	Right-handed 310
Helix 61	AG7	K	13	32	Right-handed alpha
Helix 62	AG8	K	35	38	Right-handed 310
Helix 63	AG9	K	47	49	Right-handed 310
Helix 64	AH1	K	74	94	Right-handed alpha
Helix 65	AH2	K	96	98	Right-handed 310
Helix 66	AH3	K	108	110	Right-handed 310
Helix 67	AH4	L	13	33	Right-handed alpha
Helix 68	AH5	L	35	38	Right-handed 310
Helix 69	AH6	L	47	49	Right-handed 310
Helix 70	AH7	L	74	94	Right-handed alpha
Helix 71	AH8	L	96	98	Right-handed 310
Helix 72	AH9	L	108	110	Right-handed 310

There are 12 sheets in PDB entry 7MS9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	A	100	107	anti-parallel
Strand 3	A	63	70	parallel
Strand 4	A	2	8	anti-parallel
Strand 5	A	40	46	parallel
Strand 6	C	51	53	anti-parallel
Strand 7	C	56	57	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	51	53	anti-parallel
Strand 3	B	40	46	anti-parallel
Strand 4	B	2	8	parallel
Strand 5	B	63	70	anti-parallel
Strand 6	B	100	107	parallel
Strand 7	C	112	113	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	C	100	107	anti-parallel
Strand 3	C	63	70	parallel
Strand 4	C	2	8	anti-parallel
Strand 5	C	40	46	parallel
Strand 6	B	51	53	anti-parallel
Strand 7	B	56	57	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	113	first strand
Strand 2	D	100	107	anti-parallel
Strand 3	D	63	70	parallel
Strand 4	D	2	8	anti-parallel
Strand 5	D	40	46	parallel
Strand 6	F	51	53	anti-parallel
Strand 7	F	56	57	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	51	53	anti-parallel
Strand 3	E	40	46	anti-parallel
Strand 4	E	2	8	parallel
Strand 5	E	63	70	anti-parallel
Strand 6	E	100	107	parallel
Strand 7	F	112	113	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	F	100	107	anti-parallel
Strand 3	F	63	70	parallel
Strand 4	F	2	8	anti-parallel
Strand 5	F	40	46	parallel
Strand 6	E	51	53	anti-parallel
Strand 7	E	56	57	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	113	first strand
Strand 2	G	100	107	anti-parallel
Strand 3	G	63	70	parallel
Strand 4	G	2	8	anti-parallel
Strand 5	G	40	46	parallel
Strand 6	I	51	53	anti-parallel
Strand 7	I	56	57	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	57	first strand
Strand 2	G	51	53	anti-parallel
Strand 3	H	40	46	anti-parallel
Strand 4	H	2	8	parallel
Strand 5	H	63	70	anti-parallel
Strand 6	H	100	107	parallel
Strand 7	I	112	113	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	112	113	first strand
Strand 2	I	100	107	anti-parallel
Strand 3	I	63	70	parallel
Strand 4	I	2	8	anti-parallel
Strand 5	I	40	46	parallel
Strand 6	H	51	53	anti-parallel
Strand 7	H	56	57	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	112	113	first strand
Strand 2	J	100	107	anti-parallel
Strand 3	J	63	70	parallel
Strand 4	J	2	8	anti-parallel
Strand 5	J	40	46	parallel
Strand 6	L	51	53	anti-parallel
Strand 7	L	56	57	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	57	first strand
Strand 2	J	51	53	anti-parallel
Strand 3	K	40	46	anti-parallel
Strand 4	K	2	8	parallel
Strand 5	K	63	70	anti-parallel
Strand 6	K	100	107	parallel
Strand 7	L	112	113	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	112	113	first strand
Strand 2	L	100	107	anti-parallel
Strand 3	L	63	70	parallel
Strand 4	L	2	8	anti-parallel
Strand 5	L	40	46	parallel
Strand 6	K	51	53	anti-parallel
Strand 7	K	56	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MS9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MS9