Analysis of interatomic Contacts of Structural Units in PDB entry:
7MSK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MSK entry

There are 2 chains in PDB entry 7MSK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ILE 420
B
 ALA -1HIS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7MSK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
18 25Right-handed alpha
Helix 3
AA3
A
43 57Right-handed alpha
Helix 4
AA4
A
74 83Right-handed alpha
Helix 5
AA5
A
99 108Right-handed alpha
Helix 6
AA6
A
121 132Right-handed alpha
Helix 7
AA7
A
152 164Right-handed alpha
Helix 8
AA8
A
233 252Right-handed alpha
Helix 9
AA9
A
255 269Right-handed alpha
Helix 10
AB1
A
272 288Right-handed alpha
Helix 11
AB2
A
295 310Right-handed alpha
Helix 12
AB3
A
312 327Right-handed alpha
Helix 13
AB4
A
331 361Right-handed alpha
Helix 14
AB5
A
373 387Right-handed alpha
Helix 15
AB6
A
389 400Right-handed alpha
Helix 16
AB7
A
402 419Right-handed alpha
Helix 17
AB8
B
4 15Right-handed alpha
Helix 18
AB9
B
18 25Right-handed alpha
Helix 19
AC1
B
43 56Right-handed alpha
Helix 20
AC2
B
74 83Right-handed alpha
Helix 21
AC3
B
99 108Right-handed alpha
Helix 22
AC4
B
121 133Right-handed alpha
Helix 23
AC5
B
152 164Right-handed alpha
Helix 24
AC6
B
233 252Right-handed alpha
Helix 25
AC7
B
255 269Right-handed alpha
Helix 26
AC8
B
272 288Right-handed alpha
Helix 27
AC9
B
295 310Right-handed alpha
Helix 28
AD1
B
312 327Right-handed alpha
Helix 29
AD2
B
331 360Right-handed alpha
Helix 30
AD3
B
373 387Right-handed alpha
Helix 31
AD4
B
389 399Right-handed alpha
Helix 32
AD5
B
403 419Right-handed alpha
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There are 8 sheets in PDB entry 7MSK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
34 36anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
88 93parallel
Strand 3
A
62 68parallel
Strand 4
A
137 140parallel
Strand 5
A
188 190anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
215 224anti-parallel
Strand 3
A
169 176parallel
Strand 4
A
181 182anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
204 206anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 3first strand
Strand 2
B
34 36anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
88 93parallel
Strand 3
B
62 68parallel
Strand 4
B
137 140parallel
Strand 5
B
188 190anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
215 224anti-parallel
Strand 3
B
169 175parallel
Strand 4
B
181 182anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
204 206anti-parallel
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