Analysis of interatomic Contacts of Structural Units in PDB entry:
7MSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MSP entry

There are 2 chains in PDB entry 7MSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LEU 335
B
 LYS 2ILE 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7MSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
17 24Right-handed alpha
Helix 3
AA3
A
28 32Right-handed 310
Helix 4
AA4
A
40 51Right-handed alpha
Helix 5
AA5
A
68 77Right-handed alpha
Helix 6
AA6
A
93 102Right-handed alpha
Helix 7
AA7
A
115 127Right-handed alpha
Helix 8
AA8
A
143 146Right-handed 310
Helix 9
AA9
A
147 159Right-handed alpha
Helix 10
AB1
A
228 247Right-handed alpha
Helix 11
AB2
A
250 264Right-handed alpha
Helix 12
AB3
A
266 282Right-handed alpha
Helix 13
AB4
A
289 304Right-handed alpha
Helix 14
AB5
A
306 321Right-handed alpha
Helix 15
AB6
A
326 333Right-handed alpha
Helix 16
AB7
B
3 12Right-handed alpha
Helix 17
AB8
B
17 24Right-handed alpha
Helix 18
AB9
B
28 32Right-handed 310
Helix 19
AC1
B
40 51Right-handed alpha
Helix 20
AC2
B
68 77Right-handed alpha
Helix 21
AC3
B
93 102Right-handed alpha
Helix 22
AC4
B
115 127Right-handed alpha
Helix 23
AC5
B
143 146Right-handed 310
Helix 24
AC6
B
147 159Right-handed alpha
Helix 25
AC7
B
228 247Right-handed alpha
Helix 26
AC8
B
250 264Right-handed alpha
Helix 27
AC9
B
266 282Right-handed alpha
Helix 28
AD1
B
289 304Right-handed alpha
Helix 29
AD2
B
306 321Right-handed alpha
Helix 30
AD3
B
326 334Right-handed alpha
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There are 6 sheets in PDB entry 7MSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
82 87parallel
Strand 3
A
56 62parallel
Strand 4
A
131 134parallel
Strand 5
A
183 185anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
210 219anti-parallel
Strand 3
A
164 171parallel
Strand 4
A
176 177anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
199 202anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 109first strand
Strand 2
B
82 87parallel
Strand 3
B
56 62parallel
Strand 4
B
131 134parallel
Strand 5
B
183 185anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
210 219anti-parallel
Strand 3
B
164 171parallel
Strand 4
B
176 177anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
199 202anti-parallel
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