Analysis of interatomic Contacts of Structural Units in PDB entry:
7MT9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MT9 entry

There are 2 chains in PDB entry 7MT9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LEU 6	SER 508
R	MET 1	GLY 324

There are 30 helices in PDB entry 7MT9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	6	24	Right-handed alpha
Helix 2	AA2	G	183	185	Right-handed 310
Helix 3	AA3	G	220	227	Right-handed alpha
Helix 4	AA4	G	228	242	Right-handed alpha
Helix 5	AA5	G	271	279	Right-handed alpha
Helix 6	AA6	G	287	308	Right-handed alpha
Helix 7	AA7	G	316	318	Right-handed 310
Helix 8	AA8	G	332	336	Right-handed 310
Helix 9	AA9	G	357	362	Right-handed alpha
Helix 10	AB1	G	368	385	Right-handed alpha
Helix 11	AB2	G	397	408	Right-handed alpha
Helix 12	AB3	G	417	428	Right-handed alpha
Helix 13	AB4	G	431	435	Right-handed 310
Helix 14	AB5	G	445	455	Right-handed 310
Helix 15	AB6	G	456	462	Right-handed alpha
Helix 16	AB7	G	496	507	Right-handed alpha
Helix 17	AB8	R	33	65	Right-handed alpha
Helix 18	AB9	R	66	69	Right-handed 310
Helix 19	AC1	R	70	72	Right-handed 310
Helix 20	AC2	R	73	90	Right-handed alpha
Helix 21	AC3	R	90	99	Right-handed alpha
Helix 22	AC4	R	105	141	Right-handed alpha
Helix 23	AC5	R	149	169	Right-handed alpha
Helix 24	AC6	R	170	173	Right-handed 310
Helix 25	AC7	R	199	211	Right-handed alpha
Helix 26	AC8	R	212	236	Right-handed alpha
Helix 27	AC9	R	240	278	Right-handed alpha
Helix 28	AD1	R	289	297	Right-handed alpha
Helix 29	AD2	R	297	307	Right-handed alpha
Helix 30	AD3	R	310	322	Right-handed alpha

There are 5 sheets in PDB entry 7MT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	195	first strand
Strand 2	G	200	206	anti-parallel
Strand 3	G	212	219	anti-parallel
Strand 4	G	259	265	anti-parallel
Strand 5	G	250	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	310	311	first strand
Strand 2	G	337	338	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	320	322	first strand
Strand 2	G	328	330	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	4	5	first strand
Strand 2	R	10	11	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	178	181	first strand
Strand 2	R	186	189	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MT9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MT9