Analysis of interatomic Contacts of Structural Units in PDB entry:
7MTS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MTS entry

There are 5 chains in PDB entry 7MTS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 23	ALA 830
B	LYS 23	LYS 823
C	LEU 5	PHE 354
D	GLU 3	ASN 340
E	ALA 7	GLU 63

There are 62 helices in PDB entry 7MTS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	74	Right-handed alpha
Helix 2	AA2	A	94	102	Right-handed alpha
Helix 3	AA3	A	102	107	Right-handed alpha
Helix 4	AA4	A	144	156	Right-handed alpha
Helix 5	AA5	A	170	174	Right-handed 310
Helix 6	AA6	A	188	202	Right-handed alpha
Helix 7	AA7	A	214	230	Right-handed alpha
Helix 8	AA8	A	246	259	Right-handed alpha
Helix 9	AA9	A	271	286	Right-handed alpha
Helix 10	AB1	A	307	312	Right-handed alpha
Helix 11	AB2	A	324	332	Right-handed alpha
Helix 12	AB3	A	344	354	Right-handed alpha
Helix 13	AB4	A	377	400	Right-handed alpha
Helix 14	AB5	A	414	422	Right-handed alpha
Helix 15	AB6	A	565	592	Right-handed alpha
Helix 16	AB7	A	595	601	Right-handed alpha
Helix 17	AB8	A	603	625	Right-handed alpha
Helix 18	AB9	A	630	663	Right-handed alpha
Helix 19	AC1	A	664	666	Right-handed 310
Helix 20	AC2	A	677	701	Right-handed alpha
Helix 21	AC3	A	727	749	Right-handed alpha
Helix 22	AC4	A	753	757	Right-handed 310
Helix 23	AC5	A	758	783	Right-handed alpha
Helix 24	AC6	A	786	819	Right-handed alpha
Helix 25	AC7	A	820	824	Right-handed 310
Helix 26	AC8	B	58	73	Right-handed alpha
Helix 27	AC9	B	94	107	Right-handed alpha
Helix 28	AD1	B	144	156	Right-handed alpha
Helix 29	AD2	B	169	174	Right-handed 310
Helix 30	AD3	B	190	202	Right-handed alpha
Helix 31	AD4	B	214	230	Right-handed alpha
Helix 32	AD5	B	246	258	Right-handed alpha
Helix 33	AD6	B	271	285	Right-handed alpha
Helix 34	AD7	B	307	312	Right-handed alpha
Helix 35	AD8	B	324	332	Right-handed alpha
Helix 36	AD9	B	344	354	Right-handed alpha
Helix 37	AE1	B	377	400	Right-handed alpha
Helix 38	AE2	B	415	422	Right-handed alpha
Helix 39	AE3	B	423	426	Right-handed 310
Helix 40	AE4	B	565	592	Right-handed alpha
Helix 41	AE5	B	595	601	Right-handed alpha
Helix 42	AE6	B	604	624	Right-handed alpha
Helix 43	AE7	B	628	660	Right-handed alpha
Helix 44	AE8	B	677	701	Right-handed alpha
Helix 45	AE9	B	725	727	Right-handed 310
Helix 46	AF1	B	728	749	Right-handed alpha
Helix 47	AF2	B	757	783	Right-handed alpha
Helix 48	AF3	B	786	819	Right-handed alpha
Helix 49	AF4	C	6	31	Right-handed alpha
Helix 50	AF5	C	45	53	Right-handed alpha
Helix 51	AF6	C	207	212	Right-handed alpha
Helix 52	AF7	C	213	216	Right-handed 310
Helix 53	AF8	C	242	256	Right-handed alpha
Helix 54	AF9	C	270	281	Right-handed alpha
Helix 55	AG1	C	295	309	Right-handed alpha
Helix 56	AG2	C	330	351	Right-handed alpha
Helix 57	AG3	D	4	26	Right-handed alpha
Helix 58	AG4	D	29	34	Right-handed alpha
Helix 59	AG5	D	280	282	Right-handed 310
Helix 60	AG6	E	8	23	Right-handed alpha
Helix 61	AG7	E	29	44	Right-handed alpha
Helix 62	AG8	E	55	59	Right-handed 310

There are 24 sheets in PDB entry 7MTS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	84	90	anti-parallel
Strand 3	A	32	38	parallel
Strand 4	A	136	141	parallel
Strand 5	A	162	164	parallel
Strand 6	A	181	183	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	50	53	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	241	first strand
Strand 2	A	206	212	parallel
Strand 3	A	265	269	parallel
Strand 4	A	290	293	parallel
Strand 5	A	315	319	parallel
Strand 6	A	453	460	anti-parallel
Strand 7	A	466	474	anti-parallel
Strand 8	A	478	480	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	429	first strand
Strand 2	A	440	441	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	512	first strand
Strand 2	A	520	524	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	533	first strand
Strand 2	A	536	539	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	546	first strand
Strand 2	A	553	555	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	708	first strand
Strand 2	A	718	721	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	84	90	anti-parallel
Strand 3	B	32	38	parallel
Strand 4	B	138	141	parallel
Strand 5	B	162	164	parallel
Strand 6	B	181	183	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	50	53	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	241	first strand
Strand 2	B	206	212	parallel
Strand 3	B	265	269	parallel
Strand 4	B	290	293	parallel
Strand 5	B	315	319	parallel
Strand 6	B	453	460	anti-parallel
Strand 7	B	466	474	anti-parallel
Strand 8	B	478	480	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	429	first strand
Strand 2	B	440	441	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	511	first strand
Strand 2	B	521	524	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	533	first strand
Strand 2	B	536	539	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	546	first strand
Strand 2	B	553	555	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	708	first strand
Strand 2	B	718	721	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	190	first strand
Strand 2	C	195	200	anti-parallel
Strand 3	C	34	40	parallel
Strand 4	C	220	226	parallel
Strand 5	C	263	269	parallel
Strand 6	C	319	323	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	336	340	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	88	94	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	105	first strand
Strand 2	D	111	115	anti-parallel
Strand 3	D	121	125	anti-parallel
Strand 4	D	135	139	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	176	180	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	218	222	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	260	264	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	293	298	anti-parallel
Strand 4	D	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MTS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MTS