Analysis of interatomic Contacts of Structural Units in PDB entry:
7MUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MUB entry

There are 3 chains in PDB entry 7MUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5PRO 221
B
 ASP 2THR 198
C
 CYS 28CYS 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7MUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 94Right-handed 310
Helix 2
AA2
A
195 197Right-handed 310
Helix 3
AA3
B
80 84Right-handed 310
Helix 4
AA4
B
122 129Right-handed alpha
Helix 5
AA5
B
183 188Right-handed alpha
Helix 6
AA6
C
29 52Right-handed alpha
Helix 7
AA7
C
61 74Right-handed alpha
Helix 8
AA8
C
85 116Right-handed alpha
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There are 8 sheets in PDB entry 7MUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
115 119parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
36 42anti-parallel
Strand 5
A
48 55anti-parallel
Strand 6
A
60 63anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
81 86anti-parallel
Strand 3
A
71 74anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
143 153anti-parallel
Strand 3
A
184 193anti-parallel
Strand 4
A
177 178anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
203 207anti-parallel
Strand 3
A
216 218anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
20 25anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
63 66anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
103 108parallel
Strand 3
B
85 91anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 49anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
133 140anti-parallel
Strand 3
B
174 180anti-parallel
Strand 4
B
160 164anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
154 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il