Analysis of interatomic Contacts of Structural Units in PDB entry:
7MYC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MYC entry

There are 2 chains in PDB entry 7MYC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 14	ILE 1232
B	ALA 14	SER 163

There are124 helices in PDB entry 7MYC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	38	Right-handed alpha
Helix 2	AA2	A	42	55	Right-handed alpha
Helix 3	AA3	A	57	78	Right-handed alpha
Helix 4	AA4	A	82	92	Right-handed alpha
Helix 5	AA5	A	94	110	Right-handed alpha
Helix 6	AA6	A	113	124	Right-handed alpha
Helix 7	AA7	A	143	153	Right-handed alpha
Helix 8	AA8	A	160	194	Right-handed alpha
Helix 9	AA9	A	200	208	Right-handed alpha
Helix 10	AB1	A	208	213	Right-handed alpha
Helix 11	AB2	A	229	252	Right-handed alpha
Helix 12	AB3	A	254	259	Right-handed alpha
Helix 13	AB4	A	265	269	Right-handed 310
Helix 14	AB5	A	274	276	Right-handed 310
Helix 15	AB6	A	277	300	Right-handed alpha
Helix 16	AB7	A	309	311	Right-handed 310
Helix 17	AB8	A	312	326	Right-handed alpha
Helix 18	AB9	A	327	330	Right-handed 310
Helix 19	AC1	A	345	361	Right-handed alpha
Helix 20	AC2	A	373	385	Right-handed alpha
Helix 21	AC3	A	394	411	Right-handed alpha
Helix 22	AC4	A	424	436	Right-handed alpha
Helix 23	AC5	A	453	458	Right-handed alpha
Helix 24	AC6	A	478	483	Right-handed alpha
Helix 25	AC7	A	484	495	Right-handed alpha
Helix 26	AC8	A	498	505	Right-handed alpha
Helix 27	AC9	A	509	514	Right-handed alpha
Helix 28	AD1	A	516	523	Right-handed alpha
Helix 29	AD2	A	536	540	Right-handed 310
Helix 30	AD3	A	541	545	Right-handed 310
Helix 31	AD4	A	555	571	Right-handed alpha
Helix 32	AD5	A	609	630	Right-handed alpha
Helix 33	AD6	A	631	649	Right-handed alpha
Helix 34	AD7	A	649	662	Right-handed alpha
Helix 35	AD8	A	664	690	Right-handed alpha
Helix 36	AD9	A	710	723	Right-handed alpha
Helix 37	AE1	A	735	749	Right-handed alpha
Helix 38	AE2	A	762	772	Right-handed alpha
Helix 39	AE3	A	783	796	Right-handed alpha
Helix 40	AE4	A	824	838	Right-handed alpha
Helix 41	AE5	A	839	842	Right-handed 310
Helix 42	AE6	A	854	869	Right-handed alpha
Helix 43	AE7	A	888	905	Right-handed alpha
Helix 44	AE8	A	915	921	Right-handed 310
Helix 45	AE9	A	933	937	Right-handed 310
Helix 46	AF1	A	952	954	Right-handed 310
Helix 47	AF2	A	955	966	Right-handed alpha
Helix 48	AF3	A	978	989	Right-handed alpha
Helix 49	AF4	A	1013	1017	Right-handed 310
Helix 50	AF5	A	1027	1032	Right-handed 310
Helix 51	AF6	A	1047	1060	Right-handed alpha
Helix 52	AF7	A	1062	1076	Right-handed alpha
Helix 53	AF8	A	1108	1122	Right-handed alpha
Helix 54	AF9	A	1131	1133	Right-handed 310
Helix 55	AG1	A	1134	1139	Right-handed 310
Helix 56	AG2	A	1142	1147	Right-handed alpha
Helix 57	AG3	A	1154	1158	Right-handed 310
Helix 58	AG4	A	1169	1182	Right-handed alpha
Helix 59	AG5	A	1194	1201	Right-handed alpha
Helix 60	AG6	A	1206	1209	Right-handed 310
Helix 61	AG7	A	1226	1231	Right-handed alpha
Helix 62	AG8	B	29	38	Right-handed alpha
Helix 63	AG9	B	42	55	Right-handed alpha
Helix 64	AH1	B	57	79	Right-handed alpha
Helix 65	AH2	B	82	91	Right-handed alpha
Helix 66	AH3	B	94	110	Right-handed alpha
Helix 67	AH4	B	113	124	Right-handed alpha
Helix 68	AH5	B	125	128	Right-handed 310
Helix 69	AH6	B	129	134	Right-handed alpha
Helix 70	AH7	B	143	153	Right-handed alpha
Helix 71	AH8	B	160	194	Right-handed alpha
Helix 72	AH9	B	200	208	Right-handed alpha
Helix 73	AI1	B	208	215	Right-handed alpha
Helix 74	AI2	B	229	252	Right-handed alpha
Helix 75	AI3	B	254	259	Right-handed alpha
Helix 76	AI4	B	265	269	Right-handed 310
Helix 77	AI5	B	274	276	Right-handed 310
Helix 78	AI6	B	277	300	Right-handed alpha
Helix 79	AI7	B	309	311	Right-handed 310
Helix 80	AI8	B	312	326	Right-handed alpha
Helix 81	AI9	B	327	330	Right-handed 310
Helix 82	AJ1	B	345	361	Right-handed alpha
Helix 83	AJ2	B	373	384	Right-handed alpha
Helix 84	AJ3	B	394	411	Right-handed alpha
Helix 85	AJ4	B	424	435	Right-handed alpha
Helix 86	AJ5	B	453	458	Right-handed alpha
Helix 87	AJ6	B	479	481	Right-handed 310
Helix 88	AJ7	B	482	495	Right-handed alpha
Helix 89	AJ8	B	498	504	Right-handed alpha
Helix 90	AJ9	B	509	514	Right-handed alpha
Helix 91	AK1	B	516	523	Right-handed alpha
Helix 92	AK2	B	536	540	Right-handed 310
Helix 93	AK3	B	541	545	Right-handed 310
Helix 94	AK4	B	555	571	Right-handed alpha
Helix 95	AK5	B	609	629	Right-handed alpha
Helix 96	AK6	B	631	649	Right-handed alpha
Helix 97	AK7	B	649	662	Right-handed alpha
Helix 98	AK8	B	664	690	Right-handed alpha
Helix 99	AK9	B	710	723	Right-handed alpha
Helix 100	AL1	B	735	749	Right-handed alpha
Helix 101	AL2	B	762	772	Right-handed alpha
Helix 102	AL3	B	783	795	Right-handed alpha
Helix 103	AL4	B	824	838	Right-handed alpha
Helix 104	AL5	B	839	842	Right-handed 310
Helix 105	AL6	B	854	869	Right-handed alpha
Helix 106	AL7	B	888	905	Right-handed alpha
Helix 107	AL8	B	915	921	Right-handed 310
Helix 108	AL9	B	933	937	Right-handed 310
Helix 109	AM1	B	952	954	Right-handed 310
Helix 110	AM2	B	955	965	Right-handed alpha
Helix 111	AM3	B	978	989	Right-handed alpha
Helix 112	AM4	B	1013	1017	Right-handed 310
Helix 113	AM5	B	1027	1032	Right-handed 310
Helix 114	AM6	B	1047	1060	Right-handed alpha
Helix 115	AM7	B	1062	1076	Right-handed alpha
Helix 116	AM8	B	1108	1122	Right-handed alpha
Helix 117	AM9	B	1131	1133	Right-handed 310
Helix 118	AN1	B	1134	1139	Right-handed 310
Helix 119	AN2	B	1142	1147	Right-handed alpha
Helix 120	AN3	B	1154	1159	Right-handed alpha
Helix 121	AN4	B	1169	1182	Right-handed alpha
Helix 122	AN5	B	1194	1201	Right-handed alpha
Helix 123	AN6	B	1206	1209	Right-handed 310
Helix 124	AN7	B	1226	1231	Right-handed alpha

There are 12 sheets in PDB entry 7MYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	222	first strand
Strand 2	A	261	264	parallel
Strand 3	A	303	305	parallel
Strand 4	A	335	340	parallel
Strand 5	A	364	369	parallel
Strand 6	A	416	421	parallel
Strand 7	A	445	449	parallel
Strand 8	A	470	476	parallel
Strand 9	A	216	222	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	576	first strand
Strand 2	A	597	606	parallel
Strand 3	A	589	594	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	580	first strand
Strand 2	A	583	584	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	758	first strand
Strand 2	A	727	730	parallel
Strand 3	A	700	703	parallel
Strand 4	A	777	781	parallel
Strand 5	A	807	810	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	911	first strand
Strand 2	A	927	930	anti-parallel
Strand 3	A	945	951	parallel
Strand 4	A	847	853	parallel
Strand 5	A	815	819	parallel
Strand 6	A	971	975	parallel
Strand 7	A	993	996	parallel
Strand 8	A	1211	1219	parallel
Strand 9	A	1090	1098	anti-parallel
Strand 10	A	1081	1083	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1149	1152	first strand
Strand 2	A	1125	1129	parallel
Strand 3	A	1101	1105	parallel
Strand 4	A	1163	1167	parallel
Strand 5	A	1190	1193	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	222	first strand
Strand 2	B	261	264	parallel
Strand 3	B	303	305	parallel
Strand 4	B	335	340	parallel
Strand 5	B	364	369	parallel
Strand 6	B	416	421	parallel
Strand 7	B	445	449	parallel
Strand 8	B	470	476	parallel
Strand 9	B	217	222	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	576	first strand
Strand 2	B	597	607	parallel
Strand 3	B	588	594	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	580	first strand
Strand 2	B	583	584	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	758	first strand
Strand 2	B	727	730	parallel
Strand 3	B	700	703	parallel
Strand 4	B	777	781	parallel
Strand 5	B	807	810	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	908	911	first strand
Strand 2	B	927	930	anti-parallel
Strand 3	B	945	951	parallel
Strand 4	B	847	853	parallel
Strand 5	B	815	819	parallel
Strand 6	B	971	975	parallel
Strand 7	B	993	996	parallel
Strand 8	B	1211	1219	parallel
Strand 9	B	1090	1098	anti-parallel
Strand 10	B	1081	1084	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1149	1152	first strand
Strand 2	B	1125	1129	parallel
Strand 3	B	1101	1105	parallel
Strand 4	B	1164	1167	parallel
Strand 5	B	1190	1193	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MYC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MYC