Analysis of interatomic Contacts of Structural Units in PDB entry:
7MYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MYJ entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 7MYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 7	ARG 171
A	SER 173	ALA 551
B	ALA 77	ARG 107
B	HIS 109	ILE 270
C	ASP 8	ARG 171
C	SER 173	ALA 551
D	ALA 75	ARG 107
D	HIS 109	ILE 270
E	SER 24	SER 46

There are 75 helices in PDB entry 7MYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	56	Right-handed alpha
Helix 2	AA2	A	57	71	Right-handed alpha
Helix 3	AA3	A	101	109	Right-handed alpha
Helix 4	AA4	A	112	133	Right-handed alpha
Helix 5	AA5	A	181	187	Right-handed alpha
Helix 6	AA6	A	192	210	Right-handed alpha
Helix 7	AA7	A	218	229	Right-handed alpha
Helix 8	AA8	A	238	249	Right-handed alpha
Helix 9	AA9	A	258	265	Right-handed alpha
Helix 10	AB1	A	265	270	Right-handed alpha
Helix 11	AB2	A	282	287	Right-handed alpha
Helix 12	AB3	A	324	337	Right-handed alpha
Helix 13	AB4	A	411	426	Right-handed alpha
Helix 14	AB5	A	534	551	Right-handed alpha
Helix 15	AB6	B	97	99	Right-handed 310
Helix 16	AB7	B	156	160	Right-handed 310
Helix 17	AB8	B	161	174	Right-handed alpha
Helix 18	AB9	B	207	212	Right-handed 310
Helix 19	AC1	B	232	236	Right-handed 310
Helix 20	AC2	C	49	55	Right-handed alpha
Helix 21	AC3	C	57	71	Right-handed alpha
Helix 22	AC4	C	101	108	Right-handed alpha
Helix 23	AC5	C	112	133	Right-handed alpha
Helix 24	AC6	C	176	180	Right-handed 310
Helix 25	AC7	C	181	186	Right-handed alpha
Helix 26	AC8	C	191	210	Right-handed alpha
Helix 27	AC9	C	218	229	Right-handed alpha
Helix 28	AD1	C	238	249	Right-handed alpha
Helix 29	AD2	C	258	265	Right-handed alpha
Helix 30	AD3	C	265	270	Right-handed alpha
Helix 31	AD4	C	282	287	Right-handed alpha
Helix 32	AD5	C	289	301	Right-handed alpha
Helix 33	AD6	C	307	312	Right-handed 310
Helix 34	AD7	C	318	337	Right-handed alpha
Helix 35	AD8	C	337	342	Right-handed alpha
Helix 36	AD9	C	411	426	Right-handed alpha
Helix 37	AE1	C	534	551	Right-handed alpha
Helix 38	AE2	D	157	160	Right-handed 310
Helix 39	AE3	D	161	176	Right-handed alpha
Helix 40	AE4	D	207	212	Right-handed 310
Helix 41	AE5	D	232	236	Right-handed 310
Helix 42	AE6	E	27	36	Right-handed alpha
Helix 43	AE7	E	37	42	Right-handed 310
Helix 44	AE8	E	56	67	Right-handed alpha
Helix 45	AE9	E	87	99	Right-handed alpha
Helix 46	AF1	E	106	112	Right-handed alpha
Helix 47	AF2	E	113	122	Right-handed alpha
Helix 48	AF3	E	137	148	Right-handed alpha
Helix 49	AF4	E	169	179	Right-handed alpha
Helix 50	AF5	E	186	191	Right-handed 310
Helix 51	AF6	E	192	197	Right-handed alpha
Helix 52	AF7	E	212	224	Right-handed alpha
Helix 53	AF8	E	244	246	Right-handed 310
Helix 54	AF9	E	247	252	Right-handed alpha
Helix 55	AG1	E	261	266	Right-handed alpha
Helix 56	AG2	E	267	270	Right-handed 310
Helix 57	AG3	E	284	296	Right-handed alpha
Helix 58	AG4	E	315	323	Right-handed alpha
Helix 59	AG5	F	27	36	Right-handed alpha
Helix 60	AG6	F	37	42	Right-handed 310
Helix 61	AG7	F	56	67	Right-handed alpha
Helix 62	AG8	F	87	99	Right-handed alpha
Helix 63	AG9	F	106	112	Right-handed alpha
Helix 64	AH1	F	113	122	Right-handed alpha
Helix 65	AH2	F	137	148	Right-handed alpha
Helix 66	AH3	F	169	179	Right-handed alpha
Helix 67	AH4	F	186	191	Right-handed 310
Helix 68	AH5	F	192	197	Right-handed alpha
Helix 69	AH6	F	212	224	Right-handed alpha
Helix 70	AH7	F	244	246	Right-handed 310
Helix 71	AH8	F	247	252	Right-handed alpha
Helix 72	AH9	F	261	266	Right-handed alpha
Helix 73	AI1	F	267	270	Right-handed 310
Helix 74	AI2	F	284	296	Right-handed alpha
Helix 75	AI3	F	315	324	Right-handed alpha

There are 22 sheets in PDB entry 7MYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	16	24	anti-parallel
Strand 3	A	29	35	anti-parallel
Strand 4	A	41	48	anti-parallel
Strand 5	A	88	94	anti-parallel
Strand 6	A	79	84	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	145	147	anti-parallel
Strand 3	A	153	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	162	163	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	408	first strand
Strand 2	A	465	471	anti-parallel
Strand 3	A	450	459	anti-parallel
Strand 4	A	437	443	anti-parallel
Strand 5	A	429	434	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	112	117	anti-parallel
Strand 3	B	106	107	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	132	134	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	141	143	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	248	257	anti-parallel
Strand 3	B	260	269	anti-parallel
Strand 4	E	45	52	parallel
Strand 5	E	72	75	parallel
Strand 6	E	82	86	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	16	24	anti-parallel
Strand 3	C	29	35	anti-parallel
Strand 4	C	41	48	anti-parallel
Strand 5	C	88	94	anti-parallel
Strand 6	C	79	84	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	145	147	anti-parallel
Strand 3	C	153	155	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	136	first strand
Strand 2	C	162	163	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	408	first strand
Strand 2	C	465	471	anti-parallel
Strand 3	C	450	459	anti-parallel
Strand 4	C	437	443	anti-parallel
Strand 5	C	429	432	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	84	first strand
Strand 2	D	112	117	anti-parallel
Strand 3	D	106	107	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	91	95	anti-parallel
Strand 3	D	121	129	anti-parallel
Strand 4	D	132	134	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	91	95	anti-parallel
Strand 3	D	121	129	anti-parallel
Strand 4	D	149	155	anti-parallel
Strand 5	D	141	143	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	241	first strand
Strand 2	D	248	257	anti-parallel
Strand 3	D	260	269	anti-parallel
Strand 4	F	45	52	parallel
Strand 5	F	72	76	parallel
Strand 6	F	81	86	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	156	first strand
Strand 2	E	163	168	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	227	231	parallel
Strand 3	E	239	242	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	280	first strand
Strand 2	E	299	303	parallel
Strand 3	E	309	314	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	156	first strand
Strand 2	F	163	168	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	208	first strand
Strand 2	F	227	231	parallel
Strand 3	F	237	242	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	280	first strand
Strand 2	F	299	303	parallel
Strand 3	F	309	314	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MYJ