Analysis of interatomic Contacts of Structural Units in PDB entry:
7MYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7MYS entry

There are 2 chains in PDB entry 7MYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLU 244
B
 HIS 0GLN 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7MYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 12Right-handed 310
Helix 2
AA2
A
13 18Right-handed alpha
Helix 3
AA3
A
19 28Right-handed alpha
Helix 4
AA4
A
37 42Right-handed 310
Helix 5
AA5
A
63 81Right-handed alpha
Helix 6
AA6
A
99 108Right-handed alpha
Helix 7
AA7
A
123 131Right-handed alpha
Helix 8
AA8
A
145 158Right-handed alpha
Helix 9
AA9
A
197 203Right-handed alpha
Helix 10
AB1
A
204 224Right-handed alpha
Helix 11
AB2
A
224 230Right-handed alpha
Helix 12
AB3
A
234 244Right-handed alpha
Helix 13
AB4
B
9 12Right-handed 310
Helix 14
AB5
B
13 18Right-handed alpha
Helix 15
AB6
B
19 28Right-handed alpha
Helix 16
AB7
B
37 42Right-handed 310
Helix 17
AB8
B
63 81Right-handed alpha
Helix 18
AB9
B
99 107Right-handed alpha
Helix 19
AC1
B
123 131Right-handed alpha
Helix 20
AC2
B
145 158Right-handed alpha
Helix 21
AC3
B
197 203Right-handed alpha
Helix 22
AC4
B
204 224Right-handed alpha
Helix 23
AC5
B
224 229Right-handed alpha
Helix 24
AC6
B
234 243Right-handed alpha
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There are 6 sheets in PDB entry 7MYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
1 6parallel
Strand 3
A
111 115parallel
Strand 4
A
88 91parallel
Strand 5
A
133 136parallel
Strand 6
A
96 97parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
61 62anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
194 195anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
1 6parallel
Strand 3
B
111 115parallel
Strand 4
B
88 91parallel
Strand 5
B
133 136parallel
Strand 6
B
96 97parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
61 62anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
194 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il