Analysis of interatomic Contacts of Structural Units in PDB entry:
7MYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7MYZ entry

There are 6 chains in PDB entry 7MYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLN 1	GLN 278
D	GLN 1	SER 117
H	GLU 1	SER 220
I	GLU 1	SER 220
L	ASP 1	GLU 213
M	ASP 1	GLU 213

There are 30 helices in PDB entry 7MYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	32	35	Right-handed 310
Helix 2	AA2	C	60	64	Right-handed 310
Helix 3	AA3	C	69	76	Right-handed 310
Helix 4	AA4	C	84	90	Right-handed alpha
Helix 5	AA5	C	125	147	Right-handed alpha
Helix 6	AA6	C	159	179	Right-handed alpha
Helix 7	AA7	C	185	207	Right-handed alpha
Helix 8	AA8	C	219	236	Right-handed alpha
Helix 9	AA9	C	249	275	Right-handed alpha
Helix 10	AB1	D	32	35	Right-handed 310
Helix 11	AB2	D	60	64	Right-handed 310
Helix 12	AB3	D	69	76	Right-handed 310
Helix 13	AB4	D	84	90	Right-handed alpha
Helix 14	AB5	H	28	32	Right-handed 310
Helix 15	AB6	H	61	65	Right-handed 310
Helix 16	AB7	H	87	91	Right-handed 310
Helix 17	AB8	H	101	103	Right-handed 310
Helix 18	AB9	H	161	163	Right-handed 310
Helix 19	AC1	H	206	209	Right-handed 310
Helix 20	AC2	I	28	32	Right-handed 310
Helix 21	AC3	I	61	65	Right-handed 310
Helix 22	AC4	I	87	91	Right-handed 310
Helix 23	AC5	I	101	103	Right-handed 310
Helix 24	AC6	I	161	163	Right-handed 310
Helix 25	AC7	I	206	209	Right-handed 310
Helix 26	AC8	L	121	128	Right-handed alpha
Helix 27	AC9	L	183	189	Right-handed alpha
Helix 28	AD1	M	50	52	Right-handed 310
Helix 29	AD2	M	121	128	Right-handed alpha
Helix 30	AD3	M	183	188	Right-handed alpha

There are 23 sheets in PDB entry 7MYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	104	113	parallel
Strand 3	C	93	99	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	56	58	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	80	83	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	104	113	parallel
Strand 3	D	93	99	anti-parallel
Strand 4	D	37	42	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	56	58	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	21	first strand
Strand 2	D	80	83	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	105	108	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	181	190	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	181	190	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	205	anti-parallel
Strand 3	H	210	216	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	112	116	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	58	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	112	116	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	105	108	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	125	129	first strand
Strand 2	I	140	150	anti-parallel
Strand 3	I	181	190	anti-parallel
Strand 4	I	168	170	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	125	129	first strand
Strand 2	I	140	150	anti-parallel
Strand 3	I	181	190	anti-parallel
Strand 4	I	174	175	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	159	first strand
Strand 2	I	199	205	anti-parallel
Strand 3	I	210	216	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 12 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	84	90	anti-parallel
Strand 5	L	102	106	anti-parallel
Strand 6	L	10	13	parallel
Strand 7	M	10	13	anti-parallel
Strand 8	M	102	106	parallel
Strand 9	M	84	90	anti-parallel
Strand 10	M	33	38	anti-parallel
Strand 11	M	45	49	anti-parallel
Strand 12	M	53	54	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	150	first strand
Strand 2	L	191	197	anti-parallel
Strand 3	L	205	210	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	66	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	118	first strand
Strand 2	M	129	139	anti-parallel
Strand 3	M	173	182	anti-parallel
Strand 4	M	159	163	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	145	150	first strand
Strand 2	M	191	197	anti-parallel
Strand 3	M	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7MYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7MYZ