Analysis of interatomic Contacts of Structural Units in PDB entry:
7N0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7N0D entry

There are 14 chains in PDB entry 7N0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ASP 131
B	GLU 2	PHE 523
C	ALA 1	ASP 131
D	GLU 2	PHE 523
T	G 1	G 19
K	C 58	C 71
P	C 67	C 71
E	ALA 1	ASP 131
F	GLU 2	PHE 523
G	ALA 1	ASP 131
H	GLU 2	PHE 523
I	G 1	G 19
L	C 58	C 71
J	C 67	C 71

There are 76 helices in PDB entry 7N0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	12	20	Right-handed alpha
Helix 3	AA3	A	22	33	Right-handed alpha
Helix 4	AA4	A	71	73	Right-handed 310
Helix 5	AA5	A	74	80	Right-handed alpha
Helix 6	AA6	A	85	89	Right-handed 310
Helix 7	AA7	A	106	114	Right-handed alpha
Helix 8	AA8	B	25	29	Right-handed 310
Helix 9	AA9	B	75	82	Right-handed alpha
Helix 10	AB1	B	146	153	Right-handed 310
Helix 11	AB2	B	158	175	Right-handed alpha
Helix 12	AB3	B	187	199	Right-handed alpha
Helix 13	AB4	B	245	247	Right-handed 310
Helix 14	AB5	B	252	258	Right-handed alpha
Helix 15	AB6	B	269	287	Right-handed alpha
Helix 16	AB7	B	301	323	Right-handed alpha
Helix 17	AB8	B	432	437	Right-handed 310
Helix 18	AB9	B	475	480	Right-handed alpha
Helix 19	AC1	B	484	505	Right-handed alpha
Helix 20	AC2	B	516	522	Right-handed alpha
Helix 21	AC3	C	7	9	Right-handed 310
Helix 22	AC4	C	10	17	Right-handed alpha
Helix 23	AC5	C	22	33	Right-handed alpha
Helix 24	AC6	C	71	73	Right-handed 310
Helix 25	AC7	C	74	80	Right-handed alpha
Helix 26	AC8	C	85	89	Right-handed 310
Helix 27	AC9	C	102	104	Right-handed 310
Helix 28	AD1	C	106	114	Right-handed alpha
Helix 29	AD2	D	75	82	Right-handed alpha
Helix 30	AD3	D	146	154	Right-handed 310
Helix 31	AD4	D	158	175	Right-handed alpha
Helix 32	AD5	D	187	199	Right-handed alpha
Helix 33	AD6	D	245	248	Right-handed 310
Helix 34	AD7	D	252	258	Right-handed alpha
Helix 35	AD8	D	269	287	Right-handed alpha
Helix 36	AD9	D	301	325	Right-handed alpha
Helix 37	AE1	D	432	437	Right-handed 310
Helix 38	AE2	D	484	504	Right-handed alpha
Helix 39	AE3	E	7	11	Right-handed 310
Helix 40	AE4	E	12	20	Right-handed alpha
Helix 41	AE5	E	22	33	Right-handed alpha
Helix 42	AE6	E	71	73	Right-handed 310
Helix 43	AE7	E	74	80	Right-handed alpha
Helix 44	AE8	E	85	89	Right-handed 310
Helix 45	AE9	E	106	114	Right-handed alpha
Helix 46	AF1	F	25	29	Right-handed 310
Helix 47	AF2	F	75	82	Right-handed alpha
Helix 48	AF3	F	146	153	Right-handed 310
Helix 49	AF4	F	158	175	Right-handed alpha
Helix 50	AF5	F	187	199	Right-handed alpha
Helix 51	AF6	F	245	247	Right-handed 310
Helix 52	AF7	F	252	258	Right-handed alpha
Helix 53	AF8	F	269	287	Right-handed alpha
Helix 54	AF9	F	301	323	Right-handed alpha
Helix 55	AG1	F	432	437	Right-handed 310
Helix 56	AG2	F	475	480	Right-handed alpha
Helix 57	AG3	F	484	505	Right-handed alpha
Helix 58	AG4	F	516	522	Right-handed alpha
Helix 59	AG5	G	7	9	Right-handed 310
Helix 60	AG6	G	10	17	Right-handed alpha
Helix 61	AG7	G	22	33	Right-handed alpha
Helix 62	AG8	G	71	73	Right-handed 310
Helix 63	AG9	G	74	80	Right-handed alpha
Helix 64	AH1	G	85	89	Right-handed 310
Helix 65	AH2	G	102	104	Right-handed 310
Helix 66	AH3	G	106	114	Right-handed alpha
Helix 67	AH4	H	75	82	Right-handed alpha
Helix 68	AH5	H	146	154	Right-handed 310
Helix 69	AH6	H	158	175	Right-handed alpha
Helix 70	AH7	H	187	199	Right-handed alpha
Helix 71	AH8	H	245	248	Right-handed 310
Helix 72	AH9	H	252	258	Right-handed alpha
Helix 73	AI1	H	269	287	Right-handed alpha
Helix 74	AI2	H	301	325	Right-handed alpha
Helix 75	AI3	H	432	437	Right-handed 310
Helix 76	AI4	H	484	504	Right-handed alpha

There are 38 sheets in PDB entry 7N0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	65	69	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	38	39	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	122	126	anti-parallel
Strand 3	B	131	135	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	104	111	anti-parallel
Strand 3	B	86	96	anti-parallel
Strand 4	B	138	139	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	104	111	anti-parallel
Strand 3	B	86	96	anti-parallel
Strand 4	B	182	185	parallel
Strand 5	B	240	243	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	216	217	anti-parallel
Strand 3	B	235	236	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	332	first strand
Strand 2	B	381	385	parallel
Strand 3	B	396	401	parallel
Strand 4	B	506	511	anti-parallel
Strand 5	B	439	441	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	363	365	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	418	421	anti-parallel
Strand 3	B	425	428	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	447	first strand
Strand 2	B	473	474	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	96	100	anti-parallel
Strand 3	C	65	69	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	38	39	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	122	126	anti-parallel
Strand 3	D	131	135	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	104	111	anti-parallel
Strand 3	D	86	96	anti-parallel
Strand 4	D	138	139	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	104	111	anti-parallel
Strand 3	D	86	96	anti-parallel
Strand 4	D	182	185	parallel
Strand 5	D	240	243	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	225	first strand
Strand 2	D	216	218	anti-parallel
Strand 3	D	235	236	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	351	first strand
Strand 2	D	328	332	parallel
Strand 3	D	381	383	parallel
Strand 4	D	396	401	parallel
Strand 5	D	506	510	anti-parallel
Strand 6	D	440	441	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	418	421	anti-parallel
Strand 3	D	425	428	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	447	first strand
Strand 2	D	473	474	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	96	100	anti-parallel
Strand 3	E	65	69	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	35	first strand
Strand 2	F	38	39	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	122	126	anti-parallel
Strand 3	F	131	135	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	118	first strand
Strand 2	F	104	111	anti-parallel
Strand 3	F	86	96	anti-parallel
Strand 4	F	138	139	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	118	first strand
Strand 2	F	104	111	anti-parallel
Strand 3	F	86	96	anti-parallel
Strand 4	F	182	185	parallel
Strand 5	F	240	243	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	225	first strand
Strand 2	F	216	217	anti-parallel
Strand 3	F	235	236	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	329	332	first strand
Strand 2	F	381	385	parallel
Strand 3	F	396	401	parallel
Strand 4	F	506	511	anti-parallel
Strand 5	F	439	441	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	350	352	first strand
Strand 2	F	363	365	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	410	412	first strand
Strand 2	F	418	421	anti-parallel
Strand 3	F	425	428	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	446	447	first strand
Strand 2	F	473	474	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	56	first strand
Strand 2	G	96	100	anti-parallel
Strand 3	G	65	69	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	35	first strand
Strand 2	H	38	39	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	55	first strand
Strand 2	H	122	126	anti-parallel
Strand 3	H	131	135	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	118	first strand
Strand 2	H	104	111	anti-parallel
Strand 3	H	86	96	anti-parallel
Strand 4	H	138	139	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	118	first strand
Strand 2	H	104	111	anti-parallel
Strand 3	H	86	96	anti-parallel
Strand 4	H	182	185	parallel
Strand 5	H	240	243	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	223	225	first strand
Strand 2	H	216	218	anti-parallel
Strand 3	H	235	236	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	351	first strand
Strand 2	H	328	332	parallel
Strand 3	H	381	383	parallel
Strand 4	H	396	401	parallel
Strand 5	H	506	510	anti-parallel
Strand 6	H	440	441	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	410	412	first strand
Strand 2	H	418	421	anti-parallel
Strand 3	H	425	428	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	446	447	first strand
Strand 2	H	473	474	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7N0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7N0D