Analysis of interatomic Contacts of Structural Units in PDB entry:
7N12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7N12 entry

There are 2 chains in PDB entry 7N12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 304ARG 498
A
 GLN 304ARG 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7N12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
324 331Right-handed 310
Helix 2
AA2
B
342 347Right-handed alpha
Helix 3
AA3
B
356 360Right-handed 310
Helix 4
AA4
B
365 379Right-handed alpha
Helix 5
AA5
B
433 444Right-handed alpha
Helix 6
AA6
B
470 474Right-handed 310
Helix 7
AA7
B
477 492Right-handed alpha
Helix 8
AA8
A
324 331Right-handed 310
Helix 9
AA9
A
342 347Right-handed alpha
Helix 10
AB1
A
356 360Right-handed 310
Helix 11
AB2
A
365 379Right-handed alpha
Helix 12
AB3
A
433 444Right-handed alpha
Helix 13
AB4
A
470 474Right-handed 310
Helix 14
AB5
A
477 492Right-handed alpha
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There are 4 sheets in PDB entry 7N12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 322first strand
Strand 2
B
305 312anti-parallel
Strand 3
B
495 498anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 401first strand
Strand 2
B
408 413anti-parallel
Strand 3
B
333 336parallel
Strand 4
B
425 428anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 322first strand
Strand 2
A
306 312anti-parallel
Strand 3
A
495 497anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 401first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
333 336parallel
Strand 4
A
425 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il