Analysis of interatomic Contacts of Structural Units in PDB entry:
7N29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7N29 entry

There are 4 chains in PDB entry 7N29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 57	GLN 442
B	ALA 56	GLU 441
C	CYS 58	GLU 441
D	CYS 58	GLU 369

There are 53 helices in PDB entry 7N29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	85	Right-handed alpha
Helix 2	AA2	A	109	133	Right-handed alpha
Helix 3	AA3	A	140	144	Right-handed 310
Helix 4	AA4	A	145	152	Right-handed alpha
Helix 5	AA5	A	160	170	Right-handed alpha
Helix 6	AA6	A	196	201	Right-handed alpha
Helix 7	AA7	A	201	212	Right-handed alpha
Helix 8	AA8	A	239	241	Right-handed 310
Helix 9	AA9	A	314	317	Right-handed 310
Helix 10	AB1	A	318	325	Right-handed alpha
Helix 11	AB2	A	327	342	Right-handed alpha
Helix 12	AB3	A	349	363	Right-handed alpha
Helix 13	AB4	A	431	434	Right-handed 310
Helix 14	AB5	B	78	85	Right-handed alpha
Helix 15	AB6	B	94	101	Right-handed alpha
Helix 16	AB7	B	108	133	Right-handed alpha
Helix 17	AB8	B	140	144	Right-handed 310
Helix 18	AB9	B	145	152	Right-handed alpha
Helix 19	AC1	B	160	170	Right-handed alpha
Helix 20	AC2	B	196	201	Right-handed alpha
Helix 21	AC3	B	201	212	Right-handed alpha
Helix 22	AC4	B	239	241	Right-handed 310
Helix 23	AC5	B	314	317	Right-handed 310
Helix 24	AC6	B	318	325	Right-handed alpha
Helix 25	AC7	B	327	342	Right-handed alpha
Helix 26	AC8	B	351	363	Right-handed alpha
Helix 27	AC9	B	431	434	Right-handed 310
Helix 28	AD1	C	78	85	Right-handed alpha
Helix 29	AD2	C	107	133	Right-handed alpha
Helix 30	AD3	C	142	144	Right-handed 310
Helix 31	AD4	C	145	152	Right-handed alpha
Helix 32	AD5	C	160	170	Right-handed alpha
Helix 33	AD6	C	196	201	Right-handed alpha
Helix 34	AD7	C	201	212	Right-handed alpha
Helix 35	AD8	C	239	241	Right-handed 310
Helix 36	AD9	C	314	317	Right-handed 310
Helix 37	AE1	C	318	325	Right-handed alpha
Helix 38	AE2	C	327	343	Right-handed alpha
Helix 39	AE3	C	349	363	Right-handed alpha
Helix 40	AE4	C	431	434	Right-handed 310
Helix 41	AE5	D	78	85	Right-handed alpha
Helix 42	AE6	D	108	133	Right-handed alpha
Helix 43	AE7	D	140	144	Right-handed 310
Helix 44	AE8	D	145	152	Right-handed alpha
Helix 45	AE9	D	160	170	Right-handed alpha
Helix 46	AF1	D	196	201	Right-handed alpha
Helix 47	AF2	D	201	212	Right-handed alpha
Helix 48	AF3	D	239	241	Right-handed 310
Helix 49	AF4	D	312	317	Right-handed alpha
Helix 50	AF5	D	318	325	Right-handed alpha
Helix 51	AF6	D	327	343	Right-handed alpha
Helix 52	AF7	D	354	364	Right-handed alpha
Helix 53	AF8	D	431	434	Right-handed 310

There are 16 sheets in PDB entry 7N29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	215	219	anti-parallel
Strand 3	A	435	439	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	70	75	parallel
Strand 3	A	154	159	parallel
Strand 4	A	178	182	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	222	228	anti-parallel
Strand 3	A	423	429	anti-parallel
Strand 4	A	397	402	anti-parallel
Strand 5	A	289	295	anti-parallel
Strand 6	A	301	305	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	415	418	anti-parallel
Strand 3	A	407	411	anti-parallel
Strand 4	A	277	282	anti-parallel
Strand 5	A	308	311	anti-parallel
Strand 6	A	373	377	anti-parallel
Strand 7	A	392	395	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	435	439	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	139	first strand
Strand 2	B	70	75	parallel
Strand 3	B	154	159	parallel
Strand 4	B	178	182	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	269	first strand
Strand 2	B	222	228	anti-parallel
Strand 3	B	423	429	anti-parallel
Strand 4	B	397	402	anti-parallel
Strand 5	B	289	295	anti-parallel
Strand 6	B	301	305	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	415	418	anti-parallel
Strand 3	B	407	411	anti-parallel
Strand 4	B	277	282	anti-parallel
Strand 5	B	308	311	anti-parallel
Strand 6	B	373	377	anti-parallel
Strand 7	B	392	395	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	215	219	anti-parallel
Strand 3	C	435	439	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	140	first strand
Strand 2	C	70	75	parallel
Strand 3	C	154	159	parallel
Strand 4	C	178	182	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	274	first strand
Strand 2	C	222	228	anti-parallel
Strand 3	C	423	429	anti-parallel
Strand 4	C	397	402	anti-parallel
Strand 5	C	289	295	anti-parallel
Strand 6	C	301	305	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	415	418	anti-parallel
Strand 3	C	407	411	anti-parallel
Strand 4	C	277	282	anti-parallel
Strand 5	C	308	311	anti-parallel
Strand 6	C	373	377	anti-parallel
Strand 7	C	392	395	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	435	439	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	70	75	parallel
Strand 3	D	154	159	parallel
Strand 4	D	178	182	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	222	228	anti-parallel
Strand 3	D	423	429	anti-parallel
Strand 4	D	397	402	anti-parallel
Strand 5	D	289	295	anti-parallel
Strand 6	D	301	305	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	415	418	anti-parallel
Strand 3	D	408	411	anti-parallel
Strand 4	D	277	280	anti-parallel
Strand 5	D	308	311	anti-parallel
Strand 6	D	373	377	anti-parallel
Strand 7	D	392	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7N29

Analysis of interatomic Contacts of Structural Units in PDB entry:
7N29