Analysis of interatomic Contacts of Structural Units in PDB entry:
7N5E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7N5E entry

There are 7 chains in PDB entry 7N5E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 96	ASN 751
B	ASN 290	ASN 751
C	ASN 290	ASN 751
D	ASN 290	ASN 751
E	ASN 290	ASN 751
F	ASN 290	ASN 751
G	ASN 290	ASN 751

There are 68 helices in PDB entry 7N5E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	295	333	Right-handed alpha
Helix 2	AA2	A	335	353	Right-handed alpha
Helix 3	AA3	A	504	552	Right-handed alpha
Helix 4	AA4	A	556	574	Right-handed alpha
Helix 5	AA5	A	574	590	Right-handed alpha
Helix 6	AA6	A	631	635	Right-handed alpha
Helix 7	AA7	A	661	678	Right-handed alpha
Helix 8	AA8	A	714	737	Right-handed alpha
Helix 9	AA9	B	295	329	Right-handed alpha
Helix 10	AB1	B	330	331	Right-handed 310
Helix 11	AB2	B	332	334	Right-handed 310
Helix 12	AB3	B	335	349	Right-handed alpha
Helix 13	AB4	B	508	524	Right-handed alpha
Helix 14	AB5	B	526	552	Right-handed alpha
Helix 15	AB6	B	556	590	Right-handed alpha
Helix 16	AB7	B	631	635	Right-handed alpha
Helix 17	AB8	B	661	678	Right-handed alpha
Helix 18	AB9	B	714	737	Right-handed alpha
Helix 19	AC1	C	295	329	Right-handed alpha
Helix 20	AC2	C	330	331	Right-handed 310
Helix 21	AC3	C	332	334	Right-handed 310
Helix 22	AC4	C	335	352	Right-handed alpha
Helix 23	AC5	C	508	524	Right-handed alpha
Helix 24	AC6	C	526	552	Right-handed alpha
Helix 25	AC7	C	556	590	Right-handed alpha
Helix 26	AC8	C	631	635	Right-handed alpha
Helix 27	AC9	C	661	678	Right-handed alpha
Helix 28	AD1	C	714	737	Right-handed alpha
Helix 29	AD2	D	295	327	Right-handed alpha
Helix 30	AD3	D	328	331	Right-handed 310
Helix 31	AD4	D	332	334	Right-handed 310
Helix 32	AD5	D	335	352	Right-handed alpha
Helix 33	AD6	D	508	524	Right-handed alpha
Helix 34	AD7	D	526	552	Right-handed alpha
Helix 35	AD8	D	556	590	Right-handed alpha
Helix 36	AD9	D	631	635	Right-handed alpha
Helix 37	AE1	D	661	678	Right-handed alpha
Helix 38	AE2	D	714	737	Right-handed alpha
Helix 39	AE3	E	295	327	Right-handed alpha
Helix 40	AE4	E	328	331	Right-handed 310
Helix 41	AE5	E	332	334	Right-handed 310
Helix 42	AE6	E	335	352	Right-handed alpha
Helix 43	AE7	E	508	524	Right-handed alpha
Helix 44	AE8	E	526	552	Right-handed alpha
Helix 45	AE9	E	556	590	Right-handed alpha
Helix 46	AF1	E	631	635	Right-handed alpha
Helix 47	AF2	E	661	678	Right-handed alpha
Helix 48	AF3	E	714	736	Right-handed alpha
Helix 49	AF4	F	295	329	Right-handed alpha
Helix 50	AF5	F	330	331	Right-handed 310
Helix 51	AF6	F	332	334	Right-handed 310
Helix 52	AF7	F	335	352	Right-handed alpha
Helix 53	AF8	F	508	524	Right-handed alpha
Helix 54	AF9	F	526	552	Right-handed alpha
Helix 55	AG1	F	556	590	Right-handed alpha
Helix 56	AG2	F	631	635	Right-handed alpha
Helix 57	AG3	F	661	678	Right-handed alpha
Helix 58	AG4	F	714	737	Right-handed alpha
Helix 59	AG5	G	295	329	Right-handed alpha
Helix 60	AG6	G	330	331	Right-handed 310
Helix 61	AG7	G	332	334	Right-handed 310
Helix 62	AG8	G	335	352	Right-handed alpha
Helix 63	AG9	G	508	524	Right-handed alpha
Helix 64	AH1	G	526	552	Right-handed alpha
Helix 65	AH2	G	556	590	Right-handed alpha
Helix 66	AH3	G	631	635	Right-handed alpha
Helix 67	AH4	G	661	678	Right-handed alpha
Helix 68	AH5	G	714	737	Right-handed alpha

There are 9 sheets in PDB entry 7N5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 36 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	602	first strand
Strand 2	A	605	612	anti-parallel
Strand 3	A	616	620	anti-parallel
Strand 4	A	626	630	anti-parallel
Strand 5	B	639	641	anti-parallel
Strand 6	B	599	602	anti-parallel
Strand 7	B	605	612	anti-parallel
Strand 8	B	616	620	anti-parallel
Strand 9	B	626	630	anti-parallel
Strand 10	C	639	641	anti-parallel
Strand 11	C	599	602	anti-parallel
Strand 12	C	605	612	anti-parallel
Strand 13	C	616	620	anti-parallel
Strand 14	C	626	630	anti-parallel
Strand 15	D	639	641	anti-parallel
Strand 16	D	599	602	anti-parallel
Strand 17	D	605	612	anti-parallel
Strand 18	D	616	620	anti-parallel
Strand 19	D	626	630	anti-parallel
Strand 20	E	639	641	anti-parallel
Strand 21	E	599	602	anti-parallel
Strand 22	E	605	612	anti-parallel
Strand 23	E	616	620	anti-parallel
Strand 24	E	626	630	anti-parallel
Strand 25	F	639	641	anti-parallel
Strand 26	F	599	602	anti-parallel
Strand 27	F	605	611	anti-parallel
Strand 28	F	616	620	anti-parallel
Strand 29	F	626	630	anti-parallel
Strand 30	G	639	641	anti-parallel
Strand 31	G	599	602	anti-parallel
Strand 32	G	605	612	anti-parallel
Strand 33	G	616	620	anti-parallel
Strand 34	G	626	630	anti-parallel
Strand 35	A	639	641	anti-parallel
Strand 36	A	599	602	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	657	first strand
Strand 2	A	699	708	anti-parallel
Strand 3	A	683	695	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	750	first strand
Strand 2	B	745	751	parallel
Strand 3	C	745	749	parallel
Strand 4	D	745	749	parallel
Strand 5	E	745	749	parallel
Strand 6	F	745	749	parallel
Strand 7	G	745	749	parallel
Strand 8	A	745	750	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	657	first strand
Strand 2	B	699	707	anti-parallel
Strand 3	B	688	695	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	657	first strand
Strand 2	C	699	708	anti-parallel
Strand 3	C	683	695	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	657	first strand
Strand 2	D	699	707	anti-parallel
Strand 3	D	688	695	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	649	657	first strand
Strand 2	E	699	707	anti-parallel
Strand 3	E	688	695	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	649	657	first strand
Strand 2	F	699	708	anti-parallel
Strand 3	F	683	695	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	649	657	first strand
Strand 2	G	699	708	anti-parallel
Strand 3	G	683	695	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7N5E

Analysis of interatomic Contacts of Structural Units in PDB entry:
7N5E