Analysis of interatomic Contacts of Structural Units in PDB entry:
7N6U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7N6U entry

There are 3 chains in PDB entry 7N6U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	LEU 663
B	THR 31	LEU 663
C	THR 31	LEU 661

There are 35 helices in PDB entry 7N6U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	61	Right-handed 310
Helix 2	AA2	A	98	117	Right-handed alpha
Helix 3	AA3	A	334	351	Right-handed alpha
Helix 4	AA4	A	352	354	Right-handed 310
Helix 5	AA5	A	475	483	Right-handed 310
Helix 6	AA6	A	535	546	Right-handed alpha
Helix 7	AA7	A	556	563	Right-handed alpha
Helix 8	AA8	A	569	595	Right-handed alpha
Helix 9	AA9	A	620	625	Right-handed alpha
Helix 10	AB1	A	639	655	Right-handed alpha
Helix 11	AB2	A	657	663	Right-handed alpha
Helix 12	AB3	B	57	62	Right-handed alpha
Helix 13	AB4	B	67	72	Right-handed alpha
Helix 14	AB5	B	99	117	Right-handed alpha
Helix 15	AB6	B	122	127	Right-handed 310
Helix 16	AB7	B	277	282	Right-handed alpha
Helix 17	AB8	B	335	351	Right-handed alpha
Helix 18	AB9	B	387	390	Right-handed 310
Helix 19	AC1	B	475	483	Right-handed alpha
Helix 20	AC2	B	531	535	Right-handed 310
Helix 21	AC3	B	538	543	Right-handed alpha
Helix 22	AC4	B	547	551	Right-handed 310
Helix 23	AC5	B	569	597	Right-handed alpha
Helix 24	AC6	B	618	626	Right-handed alpha
Helix 25	AC7	B	627	636	Right-handed alpha
Helix 26	AC8	B	638	662	Right-handed alpha
Helix 27	AC9	C	99	117	Right-handed alpha
Helix 28	AD1	C	177	181	Right-handed 310
Helix 29	AD2	C	334	353	Right-handed alpha
Helix 30	AD3	C	476	481	Right-handed alpha
Helix 31	AD4	C	532	543	Right-handed alpha
Helix 32	AD5	C	556	564	Right-handed alpha
Helix 33	AD6	C	571	597	Right-handed alpha
Helix 34	AD7	C	628	635	Right-handed alpha
Helix 35	AD8	C	640	659	Right-handed alpha

There are 28 sheets in PDB entry 7N6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	486	492	anti-parallel
Strand 3	A	224	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	85	86	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	172	177	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	190	193	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	456	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	331	332	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	284	287	anti-parallel
Strand 3	A	443	456	anti-parallel
Strand 4	A	466	470	anti-parallel
Strand 5	A	359	361	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	308	first strand
Strand 2	A	316	323	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	377	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	418	419	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	498	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	487	490	anti-parallel
Strand 3	B	223	227	anti-parallel
Strand 4	B	243	245	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	155	158	anti-parallel
Strand 3	B	129	132	anti-parallel
Strand 4	B	190	193	anti-parallel
Strand 5	B	181	183	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	168	169	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	433	435	parallel
Strand 3	B	423	425	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	261	first strand
Strand 2	B	445	451	anti-parallel
Strand 3	B	292	296	anti-parallel
Strand 4	B	331	334	anti-parallel
Strand 5	B	413	414	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	453	454	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	312	first strand
Strand 2	B	315	320	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	393	394	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	385	first strand
Strand 2	B	418	420	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	40	first strand
Strand 2	C	494	498	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	238	239	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	175	176	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	162	first strand
Strand 2	C	169	171	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	245	first strand
Strand 2	C	223	227	anti-parallel
Strand 3	C	486	490	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	444	456	anti-parallel
Strand 3	C	285	297	anti-parallel
Strand 4	C	330	333	anti-parallel
Strand 5	C	414	419	anti-parallel
Strand 6	C	382	385	anti-parallel
Strand 7	C	376	377	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	444	456	anti-parallel
Strand 3	C	468	470	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	304	first strand
Strand 2	C	320	322	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	312	first strand
Strand 2	C	315	317	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	393	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7N6U

Analysis of interatomic Contacts of Structural Units in PDB entry:
7N6U