Analysis of interatomic Contacts of Structural Units in PDB entry:
7N6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7N6Y entry

There are 3 chains in PDB entry 7N6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	GLY 531
B	GLU 15	VAL 530
C	GLU 27	VAL 530

There are 12 helices in PDB entry 7N6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	89	Right-handed 310
Helix 2	AA2	A	91	96	Right-handed alpha
Helix 3	AA3	A	137	142	Right-handed alpha
Helix 4	AA4	A	171	175	Right-handed 310
Helix 5	AA5	A	454	462	Right-handed alpha
Helix 6	AA6	B	41	45	Right-handed 310
Helix 7	AA7	B	85	89	Right-handed 310
Helix 8	AA8	B	91	96	Right-handed alpha
Helix 9	AA9	B	454	462	Right-handed alpha
Helix 10	AB1	C	85	89	Right-handed 310
Helix 11	AB2	C	94	98	Right-handed 310
Helix 12	AB3	C	454	462	Right-handed alpha

There are 24 sheets in PDB entry 7N6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	201	209	anti-parallel
Strand 3	A	106	112	anti-parallel
Strand 4	A	157	161	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	121	125	anti-parallel
Strand 4	A	146	150	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	214	215	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	190	191	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	251	254	anti-parallel
Strand 4	A	507	508	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	303	310	anti-parallel
Strand 3	A	374	377	anti-parallel
Strand 4	A	351	358	anti-parallel
Strand 5	A	334	341	anti-parallel
Strand 6	A	389	397	anti-parallel
Strand 7	A	289	293	anti-parallel
Strand 8	A	303	310	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	429	first strand
Strand 2	A	496	499	anti-parallel
Strand 3	A	485	492	anti-parallel
Strand 4	A	472	479	anti-parallel
Strand 5	A	513	521	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	201	204	anti-parallel
Strand 3	B	111	112	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	181	187	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	146	150	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	106	108	anti-parallel
Strand 3	B	207	209	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	427	435	anti-parallel
Strand 3	B	252	254	anti-parallel
Strand 4	B	507	509	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	427	435	anti-parallel
Strand 3	B	497	500	anti-parallel
Strand 4	B	490	492	anti-parallel
Strand 5	B	472	474	anti-parallel
Strand 6	B	519	521	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	303	310	anti-parallel
Strand 3	B	289	292	anti-parallel
Strand 4	B	390	398	anti-parallel
Strand 5	B	334	342	anti-parallel
Strand 6	B	350	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	303	310	anti-parallel
Strand 3	B	373	378	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	478	479	anti-parallel
Strand 3	B	513	514	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	69	first strand
Strand 2	C	201	209	anti-parallel
Strand 3	C	106	112	anti-parallel
Strand 4	C	157	161	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	83	first strand
Strand 2	C	180	184	anti-parallel
Strand 3	C	122	127	anti-parallel
Strand 4	C	146	149	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	214	215	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	254	first strand
Strand 2	C	507	508	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	303	310	anti-parallel
Strand 3	C	289	292	anti-parallel
Strand 4	C	390	402	anti-parallel
Strand 5	C	332	342	anti-parallel
Strand 6	C	357	358	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	354	first strand
Strand 2	C	332	342	anti-parallel
Strand 3	C	390	402	anti-parallel
Strand 4	C	289	292	anti-parallel
Strand 5	C	303	310	anti-parallel
Strand 6	C	374	376	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	429	first strand
Strand 2	C	496	500	anti-parallel
Strand 3	C	490	492	anti-parallel
Strand 4	C	472	474	anti-parallel
Strand 5	C	520	521	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	432	433	first strand
Strand 2	C	450	451	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	479	first strand
Strand 2	C	513	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7N6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7N6Y