Analysis of interatomic Contacts of Structural Units in PDB entry:
7N7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7N7F entry

There are 3 chains in PDB entry 7N7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 19THR 225
B
 GLU 15THR 225
C
 GLU 27THR 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 7N7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 42Right-handed alpha
Helix 2
AA2
A
54 58Right-handed 310
Helix 3
AA3
A
85 88Right-handed 310
Helix 4
AA4
A
89 96Right-handed alpha
Helix 5
AA5
A
97 99Right-handed 310
Helix 6
AA6
A
137 142Right-handed alpha
Helix 7
AA7
B
37 45Right-handed 310
Helix 8
AA8
B
52 57Right-handed 310
Helix 9
AA9
B
85 88Right-handed 310
Helix 10
AB1
B
89 96Right-handed alpha
Helix 11
AB2
B
140 144Right-handed 310
Helix 12
AB3
C
52 58Right-handed 310
Helix 13
AB4
C
85 88Right-handed 310
Helix 14
AB5
C
89 97Right-handed alpha
Helix 15
AB6
C
139 143Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 7N7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 69first strand
Strand 2
A
201 209anti-parallel
Strand 3
A
106 112anti-parallel
Strand 4
A
157 161anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
121 125anti-parallel
Strand 4
A
146 150anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
101 103anti-parallel
Strand 3
A
214 215anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 69first strand
Strand 2
B
201 209anti-parallel
Strand 3
B
106 111anti-parallel
Strand 4
B
157 161anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
181 185anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
146 150anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
214 215anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
190 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 69first strand
Strand 2
C
201 209anti-parallel
Strand 3
C
106 113anti-parallel
Strand 4
C
157 161anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 83first strand
Strand 2
C
180 187anti-parallel
Strand 3
C
121 127anti-parallel
Strand 4
C
146 150anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
101 103anti-parallel
Strand 3
C
214 215anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il