Analysis of interatomic Contacts of Structural Units in PDB entry:
7N7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7N7J entry

There is 1 chain in PDB entry 7N7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34LEU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 7N7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 54Right-handed alpha
Helix 2
AA2
A
62 67Right-handed 310
Helix 3
AA3
A
94 105Right-handed alpha
Helix 4
AA4
A
108 118Right-handed alpha
Helix 5
AA5
A
148 169Right-handed alpha
Helix 6
AA6
A
222 227Right-handed alpha
Helix 7
AA7
A
234 241Right-handed alpha
Helix 8
AA8
A
248 269Right-handed alpha
Helix 9
AA9
A
283 289Right-handed alpha
Helix 10
AB1
A
364 374Right-handed alpha
Helix 11
AB2
A
389 405Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7N7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
178 186anti-parallel
Strand 4
A
189 197anti-parallel
Strand 5
A
142 147anti-parallel
Strand 6
A
134 136anti-parallel
Strand 7
A
122 123anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
208 212parallel
Strand 3
A
275 282anti-parallel
Strand 4
A
351 358anti-parallel
Strand 5
A
340 342anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
362 363anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il