Analysis of interatomic Contacts of Structural Units in PDB entry:
7N8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7N8J entry

There are 2 chains in PDB entry 7N8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 76SER 497
B
 ARG 2ASP 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7N8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 86Right-handed alpha
Helix 2
AA2
A
89 106Right-handed alpha
Helix 3
AA3
A
111 118Right-handed alpha
Helix 4
AA4
A
120 129Right-handed alpha
Helix 5
AA5
A
133 149Right-handed alpha
Helix 6
AA6
A
151 161Right-handed alpha
Helix 7
AA7
A
162 171Right-handed alpha
Helix 8
AA8
A
175 192Right-handed alpha
Helix 9
AA9
A
193 203Right-handed alpha
Helix 10
AB1
A
205 214Right-handed alpha
Helix 11
AB2
A
222 237Right-handed alpha
Helix 12
AB3
A
245 260Right-handed alpha
Helix 13
AB4
A
264 280Right-handed alpha
Helix 14
AB5
A
282 291Right-handed alpha
Helix 15
AB6
A
294 303Right-handed alpha
Helix 16
AB7
A
306 321Right-handed alpha
Helix 17
AB8
A
324 334Right-handed alpha
Helix 18
AB9
A
335 338Right-handed 310
Helix 19
AC1
A
339 345Right-handed alpha
Helix 20
AC2
A
348 363Right-handed alpha
Helix 21
AC3
A
366 376Right-handed alpha
Helix 22
AC4
A
377 388Right-handed alpha
Helix 23
AC5
A
390 408Right-handed alpha
Helix 24
AC6
A
409 419Right-handed alpha
Helix 25
AC7
A
421 427Right-handed alpha
Helix 26
AC8
A
433 455Right-handed alpha
Helix 27
AC9
A
456 467Right-handed alpha
Helix 28
AD1
A
468 476Right-handed alpha
Helix 29
AD2
A
481 496Right-handed alpha
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There are no sheets in PDB entry 7N8J
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il