Analysis of interatomic Contacts of Structural Units in PDB entry:
7N8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7N8L entry

There are 2 chains in PDB entry 7N8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLY 229
B
 THR 5GLY 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7N8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed 310
Helix 2
AA2
A
37 42Right-handed 310
Helix 3
AA3
A
45 66Right-handed alpha
Helix 4
AA4
A
124 130Right-handed alpha
Helix 5
AA5
A
131 142Right-handed alpha
Helix 6
AA6
A
147 168Right-handed alpha
Helix 7
AA7
B
6 11Right-handed 310
Helix 8
AA8
B
37 42Right-handed 310
Helix 9
AA9
B
45 66Right-handed alpha
Helix 10
AB1
B
124 130Right-handed alpha
Helix 11
AB2
B
131 142Right-handed alpha
Helix 12
AB3
B
147 168Right-handed alpha
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There are 6 sheets in PDB entry 7N8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
87 94anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
81 82anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 117first strand
Strand 2
A
220 228anti-parallel
Strand 3
A
209 217anti-parallel
Strand 4
A
188 195anti-parallel
Strand 5
A
176 180anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 24first strand
Strand 2
B
97 104anti-parallel
Strand 3
B
87 94anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
B
81 82anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 117first strand
Strand 2
B
220 228anti-parallel
Strand 3
B
209 217anti-parallel
Strand 4
B
188 195anti-parallel
Strand 5
B
176 180anti-parallel
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