Analysis of interatomic Contacts of Structural Units in PDB entry:
7N8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7N8W entry

There are 2 chains in PDB entry 7N8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30ASN 243
B
 SER 30LEU 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 7N8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 98Right-handed alpha
Helix 2
AA2
A
100 106Right-handed alpha
Helix 3
AA3
A
109 129Right-handed alpha
Helix 4
AA4
A
154 159Right-handed alpha
Helix 5
AA5
A
159 168Right-handed alpha
Helix 6
AA6
A
173 176Right-handed 310
Helix 7
AA7
A
182 190Right-handed alpha
Helix 8
AA8
A
195 204Right-handed alpha
Helix 9
AA9
A
215 232Right-handed alpha
Helix 10
AB1
B
90 98Right-handed alpha
Helix 11
AB2
B
100 106Right-handed alpha
Helix 12
AB3
B
109 129Right-handed alpha
Helix 13
AB4
B
154 159Right-handed alpha
Helix 14
AB5
B
159 169Right-handed alpha
Helix 15
AB6
B
173 176Right-handed 310
Helix 16
AB7
B
182 190Right-handed alpha
Helix 17
AB8
B
195 204Right-handed alpha
Helix 18
AB9
B
215 232Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7N8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
36 40anti-parallel
Strand 4
A
145 151parallel
Strand 5
A
130 131parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 80first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
36 40anti-parallel
Strand 4
A
145 151parallel
Strand 5
A
178 181parallel
Strand 6
A
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
58 67anti-parallel
Strand 3
B
36 40anti-parallel
Strand 4
B
145 151parallel
Strand 5
B
130 131parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 80first strand
Strand 2
B
58 67anti-parallel
Strand 3
B
36 40anti-parallel
Strand 4
B
145 151parallel
Strand 5
B
178 181parallel
Strand 6
B
240 241anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il