Analysis of interatomic Contacts of Structural Units in PDB entry:
7N8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7N8Y entry

There are 3 chains in PDB entry 7N8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 86	LYS 327
B	MET 1	ASP 795
C	ARG 86	PHE 322

There are 56 helices in PDB entry 7N8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	107	122	Right-handed alpha
Helix 2	AA2	A	135	140	Right-handed alpha
Helix 3	AA3	A	171	179	Right-handed alpha
Helix 4	AA4	A	220	235	Right-handed alpha
Helix 5	AA5	A	276	282	Right-handed alpha
Helix 6	AA6	A	299	307	Right-handed alpha
Helix 7	AA7	A	311	316	Right-handed 310
Helix 8	AA8	A	319	324	Right-handed alpha
Helix 9	AA9	B	5	10	Right-handed alpha
Helix 10	AB1	B	146	151	Right-handed alpha
Helix 11	AB2	B	171	177	Right-handed alpha
Helix 12	AB3	B	178	184	Right-handed alpha
Helix 13	AB4	B	231	241	Right-handed alpha
Helix 14	AB5	B	248	261	Right-handed alpha
Helix 15	AB6	B	345	350	Right-handed alpha
Helix 16	AB7	B	356	363	Right-handed alpha
Helix 17	AB8	B	368	382	Right-handed alpha
Helix 18	AB9	B	410	418	Right-handed alpha
Helix 19	AC1	B	422	434	Right-handed alpha
Helix 20	AC2	B	458	470	Right-handed alpha
Helix 21	AC3	B	494	506	Right-handed alpha
Helix 22	AC4	B	551	560	Right-handed alpha
Helix 23	AC5	B	613	626	Right-handed alpha
Helix 24	AC6	B	668	672	Right-handed 310
Helix 25	AC7	B	687	689	Right-handed 310
Helix 26	AC8	B	770	784	Right-handed alpha
Helix 27	AC9	B	785	789	Right-handed 310
Helix 28	AD1	C	107	122	Right-handed alpha
Helix 29	AD2	C	135	140	Right-handed alpha
Helix 30	AD3	C	171	179	Right-handed alpha
Helix 31	AD4	C	220	235	Right-handed alpha
Helix 32	AD5	C	276	282	Right-handed alpha
Helix 33	AD6	C	299	307	Right-handed alpha
Helix 34	AD7	C	311	316	Right-handed 310
Helix 35	AD8	C	319	324	Right-handed alpha
Helix 36	AD9	D	4	12	Right-handed alpha
Helix 37	AE1	D	17	25	Right-handed alpha
Helix 38	AE2	D	26	29	Right-handed 310
Helix 39	AE3	D	146	151	Right-handed alpha
Helix 40	AE4	D	166	171	Right-handed 310
Helix 41	AE5	D	172	183	Right-handed alpha
Helix 42	AE6	D	231	240	Right-handed alpha
Helix 43	AE7	D	249	261	Right-handed alpha
Helix 44	AE8	D	356	361	Right-handed alpha
Helix 45	AE9	D	369	384	Right-handed alpha
Helix 46	AF1	D	410	418	Right-handed alpha
Helix 47	AF2	D	422	434	Right-handed alpha
Helix 48	AF3	D	458	470	Right-handed alpha
Helix 49	AF4	D	494	503	Right-handed alpha
Helix 50	AF5	D	517	525	Right-handed alpha
Helix 51	AF6	D	548	560	Right-handed alpha
Helix 52	AF7	D	561	563	Right-handed 310
Helix 53	AF8	D	613	626	Right-handed alpha
Helix 54	AF9	D	687	689	Right-handed 310
Helix 55	AG1	D	719	727	Right-handed alpha
Helix 56	AG2	D	770	786	Right-handed alpha

There are 32 sheets in PDB entry 7N8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	187	194	parallel
Strand 3	A	205	214	anti-parallel
Strand 4	A	292	298	anti-parallel
Strand 5	A	270	275	anti-parallel
Strand 6	A	251	254	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	165	166	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	31	36	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	91	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	207	first strand
Strand 2	B	276	280	parallel
Strand 3	B	302	305	anti-parallel
Strand 4	B	312	313	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	394	395	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	330	332	anti-parallel
Strand 3	B	221	222	anti-parallel
Strand 4	B	387	388	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	409	first strand
Strand 2	B	443	447	anti-parallel
Strand 3	B	436	439	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	482	first strand
Strand 2	D	480	482	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	509	first strand
Strand 2	B	569	570	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	516	first strand
Strand 2	B	543	544	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	574	first strand
Strand 2	B	590	592	anti-parallel
Strand 3	B	680	685	anti-parallel
Strand 4	B	595	596	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	574	first strand
Strand 2	B	590	592	anti-parallel
Strand 3	B	680	685	anti-parallel
Strand 4	B	660	665	anti-parallel
Strand 5	B	644	649	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	578	first strand
Strand 2	B	586	587	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	651	652	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	738	first strand
Strand 2	B	753	762	anti-parallel
Strand 3	B	743	744	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	738	first strand
Strand 2	B	753	762	anti-parallel
Strand 3	B	706	715	anti-parallel
Strand 4	B	791	792	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	187	194	parallel
Strand 3	C	205	214	anti-parallel
Strand 4	C	292	298	anti-parallel
Strand 5	C	270	275	anti-parallel
Strand 6	C	251	254	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	C	165	166	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	31	37	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	91	98	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	63	68	anti-parallel
Strand 3	D	76	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	207	first strand
Strand 2	D	276	280	parallel
Strand 3	D	302	305	anti-parallel
Strand 4	D	310	313	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	216	first strand
Strand 2	D	394	395	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	332	first strand
Strand 2	D	220	222	anti-parallel
Strand 3	D	387	388	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	288	first strand
Strand 2	D	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	409	first strand
Strand 2	D	443	447	anti-parallel
Strand 3	D	436	439	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	508	509	first strand
Strand 2	D	569	574	parallel
Strand 3	D	590	595	anti-parallel
Strand 4	D	680	685	anti-parallel
Strand 5	D	660	665	anti-parallel
Strand 6	D	644	652	anti-parallel
Strand 7	D	636	637	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	543	544	anti-parallel
Strand 3	D	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	577	578	first strand
Strand 2	D	586	587	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	708	first strand
Strand 2	D	760	762	anti-parallel
Strand 3	D	735	737	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	714	first strand
Strand 2	D	754	757	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7N8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7N8Y