Analysis of interatomic Contacts of Structural Units in PDB entry:
7N93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7N93 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 7N93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 87GLN 389
A
 PRO 391ASP 393
A
 PRO 395VAL 418
B
 LYS 85GLN 389
B
 PRO 391VAL 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7N93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 89Right-handed 310
Helix 2
AA2
A
127 132Right-handed alpha
Helix 3
AA3
A
133 150Right-handed alpha
Helix 4
AA4
A
180 188Right-handed alpha
Helix 5
AA5
A
191 212Right-handed alpha
Helix 6
AA6
A
220 222Right-handed 310
Helix 7
AA7
A
261 266Right-handed alpha
Helix 8
AA8
A
273 289Right-handed alpha
Helix 9
AA9
A
297 308Right-handed alpha
Helix 10
AB1
A
317 328Right-handed alpha
Helix 11
AB2
A
331 335Right-handed 310
Helix 12
AB3
A
342 348Right-handed alpha
Helix 13
AB4
A
349 353Right-handed 310
Helix 14
AB5
A
356 362Right-handed alpha
Helix 15
AB6
A
383 388Right-handed alpha
Helix 16
AB7
B
87 89Right-handed 310
Helix 17
AB8
B
127 132Right-handed alpha
Helix 18
AB9
B
133 150Right-handed alpha
Helix 19
AC1
B
179 186Right-handed alpha
Helix 20
AC2
B
191 212Right-handed alpha
Helix 21
AC3
B
261 266Right-handed alpha
Helix 22
AC4
B
271 273Right-handed 310
Helix 23
AC5
B
274 289Right-handed alpha
Helix 24
AC6
B
298 307Right-handed alpha
Helix 25
AC7
B
317 328Right-handed alpha
Helix 26
AC8
B
342 348Right-handed alpha
Helix 27
AC9
B
349 353Right-handed 310
Helix 28
AD1
B
356 363Right-handed alpha
Helix 29
AD2
B
383 388Right-handed alpha
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There are 4 sheets in PDB entry 7N93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 100first strand
Strand 2
A
103 110anti-parallel
Strand 3
A
119 126anti-parallel
Strand 4
A
167 172anti-parallel
Strand 5
A
158 164anti-parallel
Strand 6
A
413 414anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
224 226anti-parallel
Strand 3
A
232 234anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 99first strand
Strand 2
B
103 110anti-parallel
Strand 3
B
119 126anti-parallel
Strand 4
B
167 173anti-parallel
Strand 5
B
158 163anti-parallel
Strand 6
B
413 414anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
232 234anti-parallel
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