Analysis of interatomic Contacts of Structural Units in PDB entry:
7N9B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7N9B entry

There are 5 chains in PDB entry 7N9B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 119	SER 1239
B	ALA 119	SER 1239
C	ALA 119	SER 1239
D	GLN 1	SER 117
F	GLN 1	SER 117

There are 69 helices in PDB entry 7N9B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	386	395	Right-handed alpha
Helix 2	AA2	A	429	435	Right-handed alpha
Helix 3	AA3	A	441	445	Right-handed 310
Helix 4	AA4	A	456	463	Right-handed alpha
Helix 5	AA5	A	475	481	Right-handed 310
Helix 6	AA6	A	497	502	Right-handed 310
Helix 7	AA7	A	508	514	Right-handed alpha
Helix 8	AA8	A	829	835	Right-handed alpha
Helix 9	AA9	A	838	847	Right-handed alpha
Helix 10	AB1	A	850	875	Right-handed alpha
Helix 11	AB2	A	908	917	Right-handed alpha
Helix 12	AB3	A	958	976	Right-handed alpha
Helix 13	AB4	A	977	980	Right-handed 310
Helix 14	AB5	A	989	1001	Right-handed alpha
Helix 15	AB6	A	1005	1011	Right-handed alpha
Helix 16	AB7	A	1011	1033	Right-handed alpha
Helix 17	AB8	A	1037	1057	Right-handed alpha
Helix 18	AB9	A	1058	1060	Right-handed 310
Helix 19	AC1	A	1068	1076	Right-handed alpha
Helix 20	AC2	A	1077	1124	Right-handed alpha
Helix 21	AC3	A	1233	1239	Right-handed alpha
Helix 22	AC4	B	386	396	Right-handed alpha
Helix 23	AC5	B	429	435	Right-handed alpha
Helix 24	AC6	B	457	462	Right-handed alpha
Helix 25	AC7	B	478	482	Right-handed 310
Helix 26	AC8	B	498	502	Right-handed 310
Helix 27	AC9	B	508	514	Right-handed alpha
Helix 28	AD1	B	530	535	Right-handed alpha
Helix 29	AD2	B	594	598	Right-handed 310
Helix 30	AD3	B	829	836	Right-handed alpha
Helix 31	AD4	B	838	846	Right-handed alpha
Helix 32	AD5	B	847	849	Right-handed 310
Helix 33	AD6	B	852	875	Right-handed alpha
Helix 34	AD7	B	908	918	Right-handed alpha
Helix 35	AD8	B	958	977	Right-handed alpha
Helix 36	AD9	B	978	981	Right-handed 310
Helix 37	AE1	B	989	1002	Right-handed alpha
Helix 38	AE2	B	1004	1011	Right-handed alpha
Helix 39	AE3	B	1011	1033	Right-handed alpha
Helix 40	AE4	B	1037	1057	Right-handed alpha
Helix 41	AE5	B	1058	1060	Right-handed 310
Helix 42	AE6	B	1068	1074	Right-handed alpha
Helix 43	AE7	B	1077	1126	Right-handed alpha
Helix 44	AE8	B	1232	1239	Right-handed alpha
Helix 45	AE9	C	386	395	Right-handed alpha
Helix 46	AF1	C	430	434	Right-handed 310
Helix 47	AF2	C	441	445	Right-handed 310
Helix 48	AF3	C	456	463	Right-handed alpha
Helix 49	AF4	C	475	479	Right-handed 310
Helix 50	AF5	C	497	499	Right-handed 310
Helix 51	AF6	C	508	514	Right-handed alpha
Helix 52	AF7	C	594	597	Right-handed 310
Helix 53	AF8	C	829	835	Right-handed alpha
Helix 54	AF9	C	838	846	Right-handed alpha
Helix 55	AG1	C	847	849	Right-handed 310
Helix 56	AG2	C	850	875	Right-handed alpha
Helix 57	AG3	C	908	918	Right-handed alpha
Helix 58	AG4	C	958	976	Right-handed alpha
Helix 59	AG5	C	977	980	Right-handed 310
Helix 60	AG6	C	989	1002	Right-handed alpha
Helix 61	AG7	C	1005	1011	Right-handed alpha
Helix 62	AG8	C	1011	1033	Right-handed alpha
Helix 63	AG9	C	1037	1057	Right-handed alpha
Helix 64	AH1	C	1058	1060	Right-handed 310
Helix 65	AH2	C	1068	1075	Right-handed alpha
Helix 66	AH3	C	1077	1125	Right-handed alpha
Helix 67	AH4	C	1232	1239	Right-handed alpha
Helix 68	AH5	D	85	89	Right-handed 310
Helix 69	AH6	F	85	89	Right-handed 310

There are 56 sheets in PDB entry 7N9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	152	158	anti-parallel
Strand 3	A	356	361	anti-parallel
Strand 4	A	182	188	anti-parallel
Strand 5	A	280	289	anti-parallel
Strand 6	A	292	298	anti-parallel
Strand 7	A	314	322	anti-parallel
Strand 8	A	128	129	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	147	first strand
Strand 2	A	363	371	anti-parallel
Strand 3	A	377	382	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	329	333	anti-parallel
Strand 3	A	195	199	anti-parallel
Strand 4	A	210	213	anti-parallel
Strand 5	A	218	221	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	411	first strand
Strand 2	A	684	691	anti-parallel
Strand 3	A	701	705	anti-parallel
Strand 4	A	740	743	anti-parallel
Strand 5	A	734	736	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	487	489	anti-parallel
Strand 3	A	599	607	anti-parallel
Strand 4	A	523	529	anti-parallel
Strand 5	A	468	472	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	487	489	anti-parallel
Strand 3	A	599	607	anti-parallel
Strand 4	A	492	495	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	616	617	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	546	first strand
Strand 2	A	584	586	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	566	first strand
Strand 2	A	580	581	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	635	first strand
Strand 2	A	638	646	anti-parallel
Strand 3	A	676	680	anti-parallel
Strand 4	A	667	669	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	747	first strand
Strand 2	A	783	788	parallel
Strand 3	A	762	767	anti-parallel
Strand 4	A	756	759	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	793	796	first strand
Strand 2	C	879	882	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	806	first strand
Strand 2	A	1165	1168	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	813	820	first strand
Strand 2	A	1151	1159	anti-parallel
Strand 3	A	1139	1148	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	826	828	first strand
Strand 2	A	950	952	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	882	first strand
Strand 2	B	793	796	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1212	1213	first strand
Strand 2	A	1179	1182	anti-parallel
Strand 3	A	1173	1174	anti-parallel
Strand 4	A	1225	1226	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1186	1188	first strand
Strand 2	A	1195	1197	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	152	157	anti-parallel
Strand 3	B	356	360	anti-parallel
Strand 4	B	181	187	anti-parallel
Strand 5	B	281	287	anti-parallel
Strand 6	B	294	297	anti-parallel
Strand 7	B	316	319	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	147	first strand
Strand 2	B	363	371	anti-parallel
Strand 3	B	377	382	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	329	332	anti-parallel
Strand 3	B	196	199	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	213	first strand
Strand 2	B	218	221	anti-parallel
Strand 3	B	263	264	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	409	first strand
Strand 2	B	686	691	anti-parallel
Strand 3	B	702	704	anti-parallel
Strand 4	B	740	743	anti-parallel
Strand 5	B	734	737	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	418	first strand
Strand 2	B	630	634	parallel
Strand 3	B	639	645	anti-parallel
Strand 4	B	676	680	anti-parallel
Strand 5	B	667	669	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	450	first strand
Strand 2	B	486	493	anti-parallel
Strand 3	B	600	608	anti-parallel
Strand 4	B	525	529	anti-parallel
Strand 5	B	468	470	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	546	first strand
Strand 2	B	584	586	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	746	747	first strand
Strand 2	B	783	788	parallel
Strand 3	B	762	767	anti-parallel
Strand 4	B	756	759	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	803	807	first strand
Strand 2	B	1164	1168	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	810	814	first strand
Strand 2	B	1151	1161	anti-parallel
Strand 3	B	817	820	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	810	814	first strand
Strand 2	B	1151	1161	anti-parallel
Strand 3	B	1139	1148	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	826	828	first strand
Strand 2	B	950	952	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1212	1213	first strand
Strand 2	B	1179	1182	anti-parallel
Strand 3	B	1173	1174	anti-parallel
Strand 4	B	1225	1226	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1186	1188	first strand
Strand 2	B	1195	1197	anti-parallel
Strand 3	B	1205	1206	anti-parallel

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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	153	158	anti-parallel
Strand 3	C	356	361	anti-parallel
Strand 4	C	181	188	anti-parallel
Strand 5	C	280	289	anti-parallel
Strand 6	C	292	298	anti-parallel
Strand 7	C	314	322	anti-parallel
Strand 8	C	128	129	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	147	first strand
Strand 2	C	363	371	anti-parallel
Strand 3	C	377	382	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	329	333	anti-parallel
Strand 3	C	195	199	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	218	220	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	406	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	701	704	anti-parallel
Strand 4	C	740	743	anti-parallel
Strand 5	C	734	737	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	450	first strand
Strand 2	C	486	495	anti-parallel
Strand 3	C	599	608	anti-parallel
Strand 4	C	523	529	anti-parallel
Strand 5	C	468	472	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	544	546	first strand
Strand 2	C	584	586	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	566	first strand
Strand 2	C	580	581	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	635	first strand
Strand 2	C	638	639	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	643	646	first strand
Strand 2	C	677	680	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	745	747	first strand
Strand 2	C	784	788	parallel
Strand 3	C	762	766	anti-parallel
Strand 4	C	756	759	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	803	806	first strand
Strand 2	C	1165	1168	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	810	820	first strand
Strand 2	C	1151	1161	anti-parallel
Strand 3	C	1139	1148	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	825	828	first strand
Strand 2	C	950	953	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1212	1214	first strand
Strand 2	C	1179	1182	anti-parallel
Strand 3	C	1173	1174	anti-parallel
Strand 4	C	1225	1226	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1186	1189	first strand
Strand 2	C	1194	1197	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	76	81	anti-parallel
Strand 4	D	66	70	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	115	116	parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	44	49	anti-parallel
Strand 3	D	31	37	anti-parallel
Strand 4	D	90	97	anti-parallel
Strand 5	D	106	107	anti-parallel

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There are 5 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	44	49	anti-parallel
Strand 3	D	31	37	anti-parallel
Strand 4	D	90	97	anti-parallel
Strand 5	D	111	113	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	76	81	anti-parallel
Strand 4	F	66	70	anti-parallel

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There are 6 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	111	116	parallel
Strand 3	F	90	96	anti-parallel
Strand 4	F	32	37	anti-parallel
Strand 5	F	43	49	anti-parallel
Strand 6	F	57	58	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	111	116	parallel
Strand 3	F	90	96	anti-parallel
Strand 4	F	106	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7N9B

Analysis of interatomic Contacts of Structural Units in PDB entry:
7N9B