Analysis of interatomic Contacts of Structural Units in PDB entry:
7NCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NCC entry

There are 2 chains in PDB entry 7NCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 284
B
 MET 1ALA 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 7NCC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
27 41Right-handed alpha
Helix 3
AA3
A
50 58Right-handed alpha
Helix 4
AA4
A
59 74Right-handed alpha
Helix 5
AA5
A
89 99Right-handed alpha
Helix 6
AA6
A
112 128Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
150 154Right-handed 310
Helix 9
AA9
A
156 168Right-handed alpha
Helix 10
AB1
A
190 202Right-handed alpha
Helix 11
AB2
A
214 224Right-handed alpha
Helix 12
AB3
A
232 250Right-handed alpha
Helix 13
AB4
A
256 278Right-handed alpha
Helix 14
AB5
B
6 17Right-handed alpha
Helix 15
AB6
B
27 41Right-handed alpha
Helix 16
AB7
B
50 58Right-handed alpha
Helix 17
AB8
B
59 74Right-handed alpha
Helix 18
AB9
B
89 99Right-handed alpha
Helix 19
AC1
B
112 128Right-handed alpha
Helix 20
AC2
B
145 147Right-handed 310
Helix 21
AC3
B
150 154Right-handed 310
Helix 22
AC4
B
156 168Right-handed alpha
Helix 23
AC5
B
190 202Right-handed alpha
Helix 24
AC6
B
214 224Right-handed alpha
Helix 25
AC7
B
232 249Right-handed alpha
Helix 26
AC8
B
256 278Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7NCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
45 49parallel
Strand 3
A
80 87parallel
Strand 4
A
103 106parallel
Strand 5
A
133 138parallel
Strand 6
A
171 174parallel
Strand 7
A
205 207parallel
Strand 8
A
226 231parallel
Strand 9
A
20 24parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
45 49parallel
Strand 3
B
80 87parallel
Strand 4
B
103 106parallel
Strand 5
B
133 138parallel
Strand 6
B
171 174parallel
Strand 7
B
205 207parallel
Strand 8
B
226 231parallel
Strand 9
B
20 24parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
179 180parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il