Analysis of interatomic Contacts of Structural Units in PDB entry:
7NCR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NCR entry

There are 2 chains in PDB entry 7NCR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 29ILE 411
B
 LEU 29ILE 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 7NCR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 39Right-handed alpha
Helix 2
AA2
A
61 77Right-handed alpha
Helix 3
AA3
A
78 82Right-handed 310
Helix 4
AA4
A
96 124Right-handed alpha
Helix 5
AA5
A
125 133Right-handed alpha
Helix 6
AA6
A
145 155Right-handed alpha
Helix 7
AA7
A
182 186Right-handed 310
Helix 8
AA8
A
197 211Right-handed alpha
Helix 9
AA9
A
226 230Right-handed 310
Helix 10
AB1
A
251 260Right-handed alpha
Helix 11
AB2
A
318 328Right-handed alpha
Helix 12
AB3
A
398 411Right-handed alpha
Helix 13
AB4
B
30 39Right-handed alpha
Helix 14
AB5
B
61 78Right-handed alpha
Helix 15
AB6
B
79 82Right-handed 310
Helix 16
AB7
B
84 89Right-handed 310
Helix 17
AB8
B
96 124Right-handed alpha
Helix 18
AB9
B
125 132Right-handed alpha
Helix 19
AC1
B
147 155Right-handed alpha
Helix 20
AC2
B
197 211Right-handed alpha
Helix 21
AC3
B
226 230Right-handed 310
Helix 22
AC4
B
252 260Right-handed alpha
Helix 23
AC5
B
320 327Right-handed alpha
Helix 24
AC6
B
398 411Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 7NCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
391 394anti-parallel
Strand 3
B
239 241anti-parallel
Strand 4
B
232 233anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
167 172parallel
Strand 3
A
158 160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
217 218anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
239 241anti-parallel
Strand 3
B
391 394anti-parallel
Strand 4
B
42 45anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
B
380 389anti-parallel
Strand 3
A
277 279anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
B
380 389anti-parallel
Strand 3
A
304 312anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 273first strand
Strand 2
A
380 389anti-parallel
Strand 3
B
277 279anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 273first strand
Strand 2
A
380 389anti-parallel
Strand 3
B
304 312anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 57first strand
Strand 2
B
167 172parallel
Strand 3
B
158 160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
217 218anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il