Analysis of interatomic Contacts of Structural Units in PDB entry:
7NDA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NDA entry

There are 5 chains in PDB entry 7NDA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	SER 1147
B	ALA 27	SER 1147
C	ALA 27	SER 1147
H	VAL 2	LYS 224
L	ASP 1	GLU 214

There are 74 helices in PDB entry 7NDA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	303	Right-handed alpha
Helix 2	AA2	A	337	343	Right-handed alpha
Helix 3	AA3	A	365	370	Right-handed alpha
Helix 4	AA4	A	405	410	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	A	737	743	Right-handed alpha
Helix 8	AA8	A	746	754	Right-handed alpha
Helix 9	AA9	A	755	757	Right-handed 310
Helix 10	AB1	A	758	783	Right-handed alpha
Helix 11	AB2	A	816	824	Right-handed alpha
Helix 12	AB3	A	866	885	Right-handed alpha
Helix 13	AB4	A	886	891	Right-handed alpha
Helix 14	AB5	A	897	908	Right-handed alpha
Helix 15	AB6	A	913	919	Right-handed alpha
Helix 16	AB7	A	919	941	Right-handed alpha
Helix 17	AB8	A	947	965	Right-handed alpha
Helix 18	AB9	A	966	968	Right-handed 310
Helix 19	AC1	A	976	982	Right-handed alpha
Helix 20	AC2	A	985	1033	Right-handed alpha
Helix 21	AC3	A	1140	1147	Right-handed alpha
Helix 22	AC4	B	294	303	Right-handed alpha
Helix 23	AC5	B	337	343	Right-handed alpha
Helix 24	AC6	B	365	370	Right-handed alpha
Helix 25	AC7	B	405	410	Right-handed 310
Helix 26	AC8	B	416	422	Right-handed alpha
Helix 27	AC9	B	438	443	Right-handed alpha
Helix 28	AD1	B	737	744	Right-handed alpha
Helix 29	AD2	B	746	754	Right-handed alpha
Helix 30	AD3	B	755	757	Right-handed 310
Helix 31	AD4	B	758	783	Right-handed alpha
Helix 32	AD5	B	816	824	Right-handed alpha
Helix 33	AD6	B	866	885	Right-handed alpha
Helix 34	AD7	B	886	891	Right-handed alpha
Helix 35	AD8	B	897	908	Right-handed alpha
Helix 36	AD9	B	913	919	Right-handed alpha
Helix 37	AE1	B	919	941	Right-handed alpha
Helix 38	AE2	B	942	944	Right-handed 310
Helix 39	AE3	B	945	966	Right-handed alpha
Helix 40	AE4	B	976	982	Right-handed alpha
Helix 41	AE5	B	985	1033	Right-handed alpha
Helix 42	AE6	B	1140	1147	Right-handed alpha
Helix 43	AE7	C	294	304	Right-handed alpha
Helix 44	AE8	C	337	343	Right-handed alpha
Helix 45	AE9	C	365	370	Right-handed alpha
Helix 46	AF1	C	405	410	Right-handed 310
Helix 47	AF2	C	416	422	Right-handed alpha
Helix 48	AF3	C	438	443	Right-handed alpha
Helix 49	AF4	C	737	743	Right-handed alpha
Helix 50	AF5	C	746	754	Right-handed alpha
Helix 51	AF6	C	755	757	Right-handed 310
Helix 52	AF7	C	758	783	Right-handed alpha
Helix 53	AF8	C	816	824	Right-handed alpha
Helix 54	AF9	C	853	856	Right-handed 310
Helix 55	AG1	C	866	885	Right-handed alpha
Helix 56	AG2	C	886	891	Right-handed alpha
Helix 57	AG3	C	897	908	Right-handed alpha
Helix 58	AG4	C	913	919	Right-handed alpha
Helix 59	AG5	C	919	941	Right-handed alpha
Helix 60	AG6	C	942	944	Right-handed 310
Helix 61	AG7	C	945	966	Right-handed alpha
Helix 62	AG8	C	976	982	Right-handed alpha
Helix 63	AG9	C	985	1033	Right-handed alpha
Helix 64	AH1	C	1140	1147	Right-handed alpha
Helix 65	AH2	H	28	31	Right-handed 310
Helix 66	AH3	H	62	65	Right-handed 310
Helix 67	AH4	H	87	91	Right-handed 310
Helix 68	AH5	H	166	168	Right-handed 310
Helix 69	AH6	H	197	200	Right-handed 310
Helix 70	AH7	H	211	214	Right-handed 310
Helix 71	AH8	L	30	32	Right-handed 310
Helix 72	AH9	L	80	84	Right-handed 310
Helix 73	AI1	L	122	127	Right-handed alpha
Helix 74	AI2	L	184	189	Right-handed alpha

There are 56 sheets in PDB entry 7NDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	61	64	anti-parallel
Strand 3	A	266	269	anti-parallel
Strand 4	A	90	96	anti-parallel
Strand 5	A	188	197	anti-parallel
Strand 6	A	200	209	anti-parallel
Strand 7	A	222	229	anti-parallel
Strand 8	A	36	37	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	C	565	567	parallel
Strand 3	C	573	577	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	546	554	anti-parallel
Strand 6	C	538	543	anti-parallel
Strand 7	C	325	328	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	141	142	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	117	122	anti-parallel
Strand 5	A	125	129	anti-parallel
Strand 6	A	169	171	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	319	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	643	645	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	565	567	anti-parallel
Strand 7	B	42	43	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	395	403	anti-parallel
Strand 3	A	507	514	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	691	696	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	702	first strand
Strand 2	B	787	788	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	788	first strand
Strand 2	C	701	702	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	64	anti-parallel
Strand 3	B	266	269	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	200	209	anti-parallel
Strand 7	B	222	229	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	141	142	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	117	122	anti-parallel
Strand 5	B	125	129	anti-parallel
Strand 6	B	169	171	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	395	403	anti-parallel
Strand 3	B	507	515	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	702	first strand
Strand 2	C	787	788	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1125	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	266	269	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	188	197	anti-parallel
Strand 6	C	200	209	anti-parallel
Strand 7	C	222	229	anti-parallel
Strand 8	C	36	37	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	141	142	parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	117	122	anti-parallel
Strand 5	C	125	129	anti-parallel
Strand 6	C	169	171	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	319	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	645	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	507	515	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	380	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	698	parallel
Strand 3	C	660	661	parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	698	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	858	860	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	112	113	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	186	195	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	186	195	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	204	210	anti-parallel
Strand 3	H	215	221	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	63	76	anti-parallel

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There are 6 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	145	151	anti-parallel
Strand 3	L	192	199	anti-parallel
Strand 4	L	206	211	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 7NDA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NDA