Analysis of interatomic Contacts of Structural Units in PDB entry:
7NDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NDE entry

There is 1 chain in PDB entry 7NDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1GLN 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 7NDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed alpha
Helix 2
AA2
A
32 34Right-handed 310
Helix 3
AA3
A
52 57Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
148 150Right-handed 310
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There are 2 sheets in PDB entry 7NDE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
36 44anti-parallel
Strand 3
A
99 104anti-parallel
Strand 4
A
222 229anti-parallel
Strand 5
A
139 146anti-parallel
Strand 6
A
151 158anti-parallel
Strand 7
A
163 169anti-parallel
Strand 8
A
176 183anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
76 80anti-parallel
Strand 3
A
238 250anti-parallel
Strand 4
A
120 131anti-parallel
Strand 5
A
190 197anti-parallel
Strand 6
A
200 205anti-parallel
Strand 7
A
208 212anti-parallel
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